Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30603
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253 35 0.074
04_04_1125 + 31085106-31085714 32 0.40
05_04_0025 - 17278869-17279386,17279485-17279602,17279806-172800... 29 2.8
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 29 2.8
12_01_0454 + 3580332-3581714 29 3.7
01_07_0118 + 41176159-41178909 29 4.9
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 6.4
04_03_0973 + 21359391-21359885,21359984-21360169,21361054-21361344 28 6.4
04_04_0691 - 27302196-27302581,27302683-27302854 28 8.5
01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879 28 8.5
>02_03_0160 - 15826050-15826462,15826870-15827140,15827242-15827253
Length = 231
Score = 34.7 bits (76), Expect = 0.074
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 162 AVVPDPATPGGPSDPATPGGPSDPACRLWRAQPKDNYSDVNCSD 293
AV DP+ P P+D A PSDPA + P D+ D + +D
Sbjct: 165 AVDADPSDPADPADDADDSDPSDPAVDADPSDPADDADDSDPAD 208
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 171 PDPAT-PGGPSDPATPGGPSDPACRLWRAQPKDNYSDVNCSD 293
PDPA P P+ A P P+DPA + P D D + SD
Sbjct: 155 PDPAVDPSDPAVDADPSDPADPADDADDSDPSDPAVDADPSD 196
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 174 DPATPGGPSDPATPGGPSDPACRLWRAQPKDNYSD 278
D A PSDPA PSDPA + P D +D
Sbjct: 178 DDADDSDPSDPAVDADPSDPADDADDSDPADCAAD 212
>04_04_1125 + 31085106-31085714
Length = 202
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 171 PDPATPGGPSDPATPG-GPSDPACRLWRAQPKDNYSDVNCSDRFETLLHTYV 323
P PATP P+ P TP PS P + P D + C D L+H V
Sbjct: 87 PTPATPATPTTPPTPAPAPSTPTGKC----PVDTLKLLACVDALNGLVHAVV 134
>05_04_0025 -
17278869-17279386,17279485-17279602,17279806-17280059,
17280095-17280205,17280374-17280513,17280583-17280641,
17280712-17280897,17280965-17281089,17281282-17281581,
17281742-17281841
Length = 636
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 126 QSHCGGRSSL*GAVVPDPATPGGPSDPATPGGP-SDPA 236
Q+ GG SS+ A P S ATP GP SDPA
Sbjct: 265 QARSGGTSSVSLAAASTDVVPAAGSREATPSGPVSDPA 302
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 232 GSDGPPGVAGSDGPPGVAGSGTTAPYN 152
GS GPP G GPP A G++ YN
Sbjct: 499 GSFGPPSKGGYAGPPQYAPQGSSHGYN 525
>12_01_0454 + 3580332-3581714
Length = 460
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 650 KLNLSAINWHRAAHCGTVRHISAQCGAMKFQIM 552
K L N ++ +HC RH+ +CGA +F +M
Sbjct: 296 KTILCVKNHYKRSHCEK-RHVCGRCGAKRFSVM 327
>01_07_0118 + 41176159-41178909
Length = 916
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 426 NSDRTVNKPTTFTIEITXACSSL*IDSFRKSLMCVM*KNNLEHNLK 563
+S T+N + + + C +L + S KS+ C+ K +E NL+
Sbjct: 564 HSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLR 609
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 232 GSDGPPGVAGSDGPPGVAG 176
G DGP G G DGP G G
Sbjct: 1032 GRDGPGGFGGRDGPGGFGG 1050
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 232 GSDGPPGVAGSDGPPGVAG 176
G DGP G G DGP G G
Sbjct: 1041 GRDGPGGFGGRDGPGGFIG 1059
>04_03_0973 + 21359391-21359885,21359984-21360169,21361054-21361344
Length = 323
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -3
Query: 310 RSVSNLSLQLTSE*LSF---GCARHSRQAGSDGPPG-VAGSDGPPGVAGSGTTAPYNDE 146
RS+ N S + +S S G +R + AG DG G VA G G G G +P+ E
Sbjct: 40 RSLGNHSRESSSSRFSAAKSGSSRRTAAAGGDGGKGGVAAGRGGGGGGGGGRRSPWMKE 98
>04_04_0691 - 27302196-27302581,27302683-27302854
Length = 185
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 132 HCGGRSSL*GAVVPDPATPGGP-SDPATPGG 221
HC G L V +PA+PGG + PA+PGG
Sbjct: 111 HCLGGMRL-HVPVSEPASPGGAGATPASPGG 140
>01_05_0764 + 25005657-25006186,25007107-25007250,25007414-25007879
Length = 379
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 217 PGVAGSDGPPGVAGSGTTAPYNDERPPQ 134
PGVA S PP G P ND P Q
Sbjct: 329 PGVAASAPPPPAVAGGGAMPPNDHPPLQ 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,717,202
Number of Sequences: 37544
Number of extensions: 321813
Number of successful extensions: 1398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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