Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30603
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 141 GRSSL*GAVVPDPATPGGPSDPATP--GGPSD 230
           GR S   A +   +TPG  S PA+P   G SD
Sbjct: 221 GRPSYTTATMATTSTPGSGSLPASPADSGVSD 252



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 180 ATPGGPSDPATPGG 221
           ATP  PS P  PGG
Sbjct: 391 ATPCTPSPPRGPGG 404


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 579 LCRNVSHCAAMC 614
           LCR  +HC A+C
Sbjct: 736 LCRYEAHCFALC 747


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 171 PDPATPGGPSDPATPGGP 224
           P   +P  PS    PGGP
Sbjct: 34  PQRGSPPNPSQGPPPGGP 51



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 229 SDGPPGVAGSDGPPGVAGSGTTAPYND 149
           SDGP     S+ P  VAG   ++  +D
Sbjct: 228 SDGPESHQNSNVPKSVAGLNVSSRRSD 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,795
Number of Sequences: 438
Number of extensions: 3912
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)