Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30602
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   1.5  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    25   2.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   3.6  

>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 137 LSYLFXYNVSFKIRVSKTLTRLNXIMVFQNETFSYCXVHM 256
           LS++  YNV+F +     L RLN       +  ++   H+
Sbjct: 318 LSFMTDYNVNFSVSTLNQLLRLNLYHAMDEKISTFSSEHI 357


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 37  HGTRDCVSK-LLTLRVVL--MADVDIVQRAA 120
           HGTR+C++K + T+R  L  +  +D+ Q AA
Sbjct: 94  HGTRECITKSIKTVRETLKKVKTIDLYQCAA 124


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 175 SCIKNVNQIE*XYGFSK*NVFVLXCTYVNLNXISKF 282
           S I N+N++   YG+S  NV+ +    V L+ +SKF
Sbjct: 329 SAINNLNELLGTYGYSNKNVYFVT---VILSSMSKF 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,476
Number of Sequences: 5004
Number of extensions: 14472
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)