Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30601
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 72 2e-14
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 69 3e-13
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 0.70
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 2.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 3.7
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 3.7
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 24 8.6
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 24 8.6
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 72.1 bits (169), Expect = 2e-14
Identities = 33/80 (41%), Positives = 53/80 (66%)
Frame = +1
Query: 16 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 195
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 196 KKELAAVRTVCSHVENMIXG 255
+K A +RT S + NMI G
Sbjct: 62 RKHNACIRTAYSIINNMIIG 81
Score = 62.5 bits (145), Expect = 2e-11
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +3
Query: 255 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 368
VT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 82 VTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGER 119
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 68.5 bits (160), Expect = 3e-13
Identities = 32/80 (40%), Positives = 51/80 (63%)
Frame = +1
Query: 16 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 195
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 196 KKELAAVRTVCSHVENMIXG 255
+K A +R+V S + NMI G
Sbjct: 62 RKHNACIRSVYSIINNMIIG 81
Score = 62.5 bits (145), Expect = 2e-11
Identities = 26/38 (68%), Positives = 32/38 (84%)
Frame = +3
Query: 255 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 368
VT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+
Sbjct: 82 VTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGER 119
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 0.70
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 43 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 210
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 211 AVRTVCSHVENMI 249
+ T+CS + N++
Sbjct: 1623 VLATICSCLGNLL 1635
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 2.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 209 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 99
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -2
Query: 219 PHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGP 97
PH GK S +N E+R A+V+S + PF GP
Sbjct: 127 PHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKPFAFPLGP 166
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 225 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFKVPFENSAGPFNCHQT 79
D P+G GS F+ V+H+N N+ + +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/44 (20%), Positives = 19/44 (43%)
Frame = -2
Query: 180 LNLQETRVYHANVNSQVFKVPFENSAGPFNCHQTRFHMDRKPVW 49
L+ Q +++ + + ++ N F+CH+ F VW
Sbjct: 259 LHNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNTFFTSNSYVW 302
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 33 SESQNPRRAYGPCEIASGDS*RAPRSSQKE 122
++ ++P+R Y E+ SGD P+ Q+E
Sbjct: 155 TDEKDPKRLYVNSEVYSGDLIWKPQGRQEE 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,026
Number of Sequences: 5004
Number of extensions: 31196
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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