Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30601
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044     94   3e-20
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    87   4e-18
03_06_0712 - 35683814-35684065,35685296-35685466                       27   3.5  
02_05_0134 + 26161904-26162776                                         27   4.6  
07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930     27   6.1  
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164...    27   6.1  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     27   6.1  
02_04_0147 + 20194244-20195717,20195953-20195969                       26   8.1  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score = 94.3 bits (224), Expect = 3e-20
 Identities = 41/82 (50%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
 Frame = +1

Query: 13  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 189
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 190 GSKKELAAVRTVCSHVENMIXG 255
           G+++ +AA+RT  SHV+N+I G
Sbjct: 61  GTRRTMAAIRTAISHVQNLITG 82



 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 28/38 (73%), Positives = 31/38 (81%)
 Frame = +3

Query: 255 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 368
           VTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 83  VTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 87.0 bits (206), Expect = 4e-18
 Identities = 38/75 (50%), Positives = 58/75 (77%), Gaps = 3/75 (4%)
 Frame = +1

Query: 40  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 210
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 211 AVRTVCSHVENMIXG 255
           A+RT  SHV+N+I G
Sbjct: 61  AIRTAISHVQNLITG 75



 Score = 63.7 bits (148), Expect = 4e-11
 Identities = 28/38 (73%), Positives = 31/38 (81%)
 Frame = +3

Query: 255 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 368
           VTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 76  VTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 113


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 109 VLKRNF-KHLAVDIRMVNPRLLKVE 180
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>02_05_0134 + 26161904-26162776
          Length = 290

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 258 LPXNHVLYM*TDCPHGGKLLFGSEPFLNLQETR 160
           LP NH LY+   C HG    F    FL + E R
Sbjct: 158 LPTNHQLYLLHTCTHGDNARFA---FLQVDELR 187


>07_03_1082 - 23834840-23835928,23836879-23836974,23837739-23837930
          Length = 458

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 73  KSRLVTVKGPRGVLKRNFKH-LAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMI 249
           K  ++   GP G +K   K+   +    +NPRL K+ +    KKEL  V    S+V  M+
Sbjct: 143 KDEVLYKAGPFGTVKAIRKNPTVIPDESINPRLAKILQQVAIKKEL-IVALANSNVREML 201


>03_01_0208 +
           1642041-1642118,1642200-1642310,1643157-1643318,
           1643433-1643600,1643683-1643843,1643930-1643991,
           1644078-1644127,1644247-1644653,1644760-1644895
          Length = 444

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 40  VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 147
           VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 135 VKIVDDQTISVDGKLIKVVSNRDPLKLPWAELGIDI 170


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 46  IPDGLTVHVKSRLVTVKGPRGVLKRN 123
           +P G T H +S +  V+GPRG +  N
Sbjct: 61  LPRGATSHRESGISAVRGPRGRIGEN 86


>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 49  PDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVE 180
           PD + VH+++  V  +    V+   F H   D+R  +PR+  +E
Sbjct: 168 PDRVRVHLRAVDVAARETHPVIC--FSHADADLRSADPRVFTIE 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,516
Number of Sequences: 37544
Number of extensions: 211428
Number of successful extensions: 446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)