Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30601
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...    97   3e-21
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    27   3.2  
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    27   4.2  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score = 97.5 bits (232), Expect = 3e-21
 Identities = 41/81 (50%), Positives = 60/81 (74%)
 Frame = +1

Query: 13  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 192
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 193 SKKELAAVRTVCSHVENMIXG 255
            +KELAA+RTVCSH++NMI G
Sbjct: 61  VRKELAAIRTVCSHIKNMIKG 81



 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = +3

Query: 255 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 368
           VT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK
Sbjct: 82  VTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEK 119


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 254 PLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 126
           P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 278 PSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 141 NSQVFKVPFENSAGPFNCHQTRFHMDR 61
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 141 NSQVFKVPFENSAGPFNCHQTRFHMDR 61
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 290 HSTHLVLEAFSYPLIMFSTCEQTVLTAAS-SFLDPNHFSTFRRRGFTMRMSTAKCLKF 120
           ++TH+ LE  S P   FS CE   + A+  S  D         +G ++R    +C  F
Sbjct: 182 NATHIKLEGVSVPFDNFSHCEDVRIHASKVSANDIQTLVEIAYKGSSLRFFYVRCDSF 239


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 188 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 69
           NH   ++R+     M T K  +    TP G L +T  + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,129,880
Number of Sequences: 27780
Number of extensions: 183689
Number of successful extensions: 404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)