Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30600
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 2.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 4.8
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 4.8
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 6.3
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 25 6.3
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 24 8.4
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 24 8.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 24 8.4
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 24 8.4
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.6 bits (56), Expect = 1.6
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 6 IVVTEHVPKEHSSLPATSNRVSALIHNYNLYGNVRDQHIYGNTEVVPLHHSASVDDSRID 185
I V +H+ L +T+ + + I ++Y N R + G+T++V + ++D +
Sbjct: 67 IEVARFTHHDHNLLLSTT-KGNKDIQYVSIYDNKRISYFSGHTDIVSSIEVSPIEDQFVS 125
Query: 186 ATSTETVR----SRVQAISGRLDTPPL 254
+ +T++ ++ G LD P L
Sbjct: 126 TANDKTLKLWKMNQSSRCLGNLDLPSL 152
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 2.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 147 LHHSASVDDSRIDATSTETVRSRVQAISGRLDTPPLTPSAKRWPSIR 287
L +++S + S + +ST + V+ S R+ PPL +P+IR
Sbjct: 17 LSNTSSTESSSSNNSSTASGSRHVKIESNRVSLPPLKIQKGSFPAIR 63
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 4.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 27 PKEHSSLPATSNRVSALIHNYN 92
P HS+LPATS +++ N N
Sbjct: 765 PSTHSTLPATSRELASSDRNIN 786
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 4.8
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 13 SPSTCPKSTAVSPPRPIEFPPSSITTICMGTSEISTYMAT 132
SP+T +T + P + PPSSI+ +++ ST ++T
Sbjct: 515 SPATTDSNTHMLPSQGSLLPPSSISETKSFSTKASTPLST 554
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 24.6 bits (51), Expect = 6.3
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 16 PSTCPKSTAVSPPRPI---EFPPSSITTICMGTSEI 114
PS PK VSP +P+ PP +T++ GT++I
Sbjct: 595 PSPSPKKKVVSPIKPLSPSRRPP--LTSLYSGTTDI 628
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.6 bits (51), Expect = 6.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 212 SSPGDKRQTRYAAPDSVSKKMA 277
SS D +++RY++PD V K A
Sbjct: 119 SSTKDSKKSRYSSPDGVLAKTA 140
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 8.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 138 VVPLHHSASVDDSRIDATSTETVRSRVQAISGRLDTP 248
V+PL D +IDA + R Q + G LD P
Sbjct: 708 VLPLTFVNEADYEKIDAEDKVSTRGIEQLLEGVLDQP 744
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 257 SQGRRIESAAYRLDSTPH 204
S G I+S+AY STPH
Sbjct: 600 SMGNAIQSSAYSAMSTPH 617
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.2 bits (50), Expect = 8.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -1
Query: 173 IVDRRGVVQRDDFSVAIYV 117
++D RG+++ DF A+YV
Sbjct: 1168 LLDHRGMIKYSDFGSALYV 1186
>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 356
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -1
Query: 167 DRRGVVQRDDFSVAIYVLISDVPIQIVVMDEGGNSI 60
+ + +++R + I + D+P Q V+MDE G ++
Sbjct: 200 EHKSLLRRTGVAAIIKNISFDIPFQKVLMDEEGINV 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,923
Number of Sequences: 5004
Number of extensions: 32547
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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