Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30600
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 28 2.4
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 28 2.4
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 27 4.1
Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical pr... 27 5.5
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 27 5.5
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF047652-4|AAC04392.2| 399|Caenorhabditis elegans Hypothetical ... 26 9.5
AC006695-8|AAF39976.1| 351|Caenorhabditis elegans Hypothetical ... 26 9.5
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 102 NVRDQHIYGNTEVVPLHHSASVDDSRIDATSTETVRSRVQAIS 230
N D YG+ VVP H SA + I+ E +R R+ ++
Sbjct: 118 NESDAVFYGSQPVVPEHLSAEESNDFIETKRLENIRIRLDVLT 160
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 192 STETVRSRVQAISGRLDTPPLTPSAKR 272
++ + RS+++ R +TPP+ PSAKR
Sbjct: 358 ASSSSRSQIKRSRQRSETPPMVPSAKR 384
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 195 TETVRSRVQAISGRLDTPPLTPSAKRWPSIRTSGT 299
+E+ + R QAI ++ TPP P + + + + GT
Sbjct: 798 SESRKKRTQAIMSQVQTPPTAPGSSKKGRVGSGGT 832
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +3
Query: 48 PATSNRVSALIHNYNLYGNVRDQHIYGNTEVVPLHHSASVDDSRIDATSTETVRSRVQAI 227
PAT R HN+ Y T + +A +R A +T T V++
Sbjct: 580 PATPPRSLIPAHNFPPPSTFPPDEDYHETTTDTVRPTAQTISTRFTAPTTTTTSKPVEST 639
Query: 228 SGRLDTPPLTPSA 266
+ DTP P A
Sbjct: 640 TTEEDTPEHVPPA 652
>Z83114-1|CAB63234.1| 549|Caenorhabditis elegans Hypothetical
protein K09B11.2 protein.
Length = 549
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 120 IYGNTEVVPLHHSASVDDSRIDATSTETVRSRVQAISGRLDTPPLTPSAKRWPSIR 287
I+G+ + L +AS++D + A S E+ + R+D P + K PS +
Sbjct: 27 IFGSCSFLCLAGNASINDYNLPAVSCESSNFMKISAPQRMDVPAILQVFKSGPSYK 82
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -1
Query: 260 RSQGRRIESAAYRLDSTPHRLRGRRVDPGIVDRRGVVQRDDFS 132
RS RR S Y +P R R R P DRR R D S
Sbjct: 117 RSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNS 159
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 137 SRPAAPLRVGRRFQDRRDVHGDGEESSPGDKRQTRYAAPDSVSKKMAVDQ 286
++P A + + + HG+ EE++PG +T AP DQ
Sbjct: 85 NKPRAWSKYAKDSSAYKRTHGEKEEANPGKSDETEEPAPKKQKDDAKFDQ 134
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Frame = +3
Query: 39 SSLPATSNRVSALIHNYN-------LYGNVRDQHIYGNTEVVPLHHSASVDDSRI 182
SS +RVSA+IHN N L N+ + + +VP+ SA+VD + I
Sbjct: 431 SSSCRPDSRVSAMIHNNNNNTESLPLAQNISNMTNKDSATIVPMPMSANVDGNEI 485
>AF047652-4|AAC04392.2| 399|Caenorhabditis elegans Hypothetical
protein C34H4.3 protein.
Length = 399
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 34 STAVSPPRPIEFPPSSITTICMGTSEISTYMATLKSSRC 150
S A +PP P PP TT +S+++ + S C
Sbjct: 358 SVATNPPNPQTTPPVITTTKLASNLNLSSFILLVSSFLC 396
>AC006695-8|AAF39976.1| 351|Caenorhabditis elegans Hypothetical
protein W06H8.4 protein.
Length = 351
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 19 STCPKSTAVSPPRPIEFPPSSITTICMGTSEISTYMATLK 138
S P++T++ PP P SS T + ++ +T TLK
Sbjct: 16 SLSPETTSLKPPAQASLPVSSPTRPAVSSTSKTTPHTTLK 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,489,715
Number of Sequences: 27780
Number of extensions: 189079
Number of successful extensions: 745
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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