Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30600
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   0.61 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   9.9  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 18  EHVPKEHSSLPATSNRVS-ALIHNYNLYGNVRDQHIYGNTEVV 143
           + + +E S  P   + +S   IHN N Y N  ++ +Y N   +
Sbjct: 291 DRMERERSKEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYI 333



 Score = 21.4 bits (43), Expect = 4.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 30  KEHSSLPATSNRVSALIHNYNLYGNVRDQHIYGNTEVVPL 149
           KE   + + SN+     +NYN Y N +  +     E +P+
Sbjct: 299 KEPKIISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPV 338


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 170 RFQDRRDVHGDGEESSPGDKRQTRYAAPD 256
           R +DR     DGE S   D R   Y   D
Sbjct: 238 RHEDRNSYRNDGERSCSRD-RSREYKKKD 265


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 170 RFQDRRDVHGDGEESSPGDKRQTRYAAPD 256
           R +DR     DGE S   D R   Y   D
Sbjct: 238 RHEDRNSYRNDGERSCSRD-RSREYKKKD 265


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 170 RFQDRRDVHGDGEESSPGDKRQTRYAAPD 256
           R +DR     DGE S   D R   Y   D
Sbjct: 238 RHEDRNSYRNDGERSCSRD-RSREYKKKD 265


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 170 RFQDRRDVHGDGEESSPGDKRQTRYAAPD 256
           R +DR     DGE S   D R   Y   D
Sbjct: 238 RHEDRNSYRNDGERSCSRD-RSREYKKKD 265


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 170 RFQDRRDVHGDGEESSPGDKRQTRYAAPD 256
           R +DR     DGE S   D R   Y   D
Sbjct: 238 RHEDRNSYRNDGERSCSRD-RSREYKKKD 265


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
 Frame = +2

Query: 170 RFQDRRDVHGDGEESSPGD-----KRQTRYAAPDSVSKK 271
           R +DR     DGE S   D     K+  RY    +V +K
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEK 276


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 170 RFQDRRDVHGDGEESSPGDKRQTRYAAPD 256
           R +DR     DGE S   D R   Y   D
Sbjct: 238 RHEDRNSYRNDGERSCSRD-RSREYKKKD 265


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 9   VVTEHVPKEHSSLP 50
           V T HVP EH  LP
Sbjct: 92  VDTLHVPSEHIWLP 105


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 80 DEGGNSIGRG 51
          DEGG S G+G
Sbjct: 21 DEGGRSYGKG 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,250
Number of Sequences: 438
Number of extensions: 2391
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)