Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30599
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 58 2e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.003
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 33 0.054
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 32 0.094
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 30 0.29
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.66
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.88
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.7
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.5
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 27 3.5
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.5
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.5
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 27 3.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 4.7
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 4.7
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 6.2
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 26 6.2
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 6.2
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 6.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 8.2
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +3
Query: 300 PPIATQCFMLNNMFDPATETNPSWDIEIRDDVISECN-KHGGVLHVYVDKASPQGNVYCK 476
PPI ++C +L NMF+PA ET+P+W E+ DV EC+ K+G V+H+ V + G ++ K
Sbjct: 502 PPIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAV-VPNELGQIFVK 560
Query: 477 CPTIATAVASVT 512
A ++T
Sbjct: 561 FENADFAEKAIT 572
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 515 LHGRWFAGRVITAAYVPLVNYHSLFPDAMTA 607
LH RWF GR I A+ +P +Y+ FP+A TA
Sbjct: 574 LHQRWFGGRTIKASILPETDYYFKFPNAKTA 604
Score = 36.3 bits (80), Expect = 0.004
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKV--GN--VTERADGGSSTRFD 138
G++ + + A+ A+E++NGF+LAGR M+V GN T RFD
Sbjct: 383 GYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFD 432
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERADGGS 123
G++TF AKK +E +NG +AGRP ++ T R GGS
Sbjct: 410 GYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGS 449
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 32.7 bits (71), Expect = 0.054
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 4 FLTFHHASDAKKAMEQLNGFELAGRPMKV 90
F FH +AK ++ LNG+E+ GR ++V
Sbjct: 277 FANFHSPEEAKTVVQVLNGYEITGRRLRV 305
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.9 bits (69), Expect = 0.094
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKV 90
G + F + +DA ++E+LNG+ GRP+++
Sbjct: 323 GVVQFENENDAASSIEKLNGYRYGGRPLQL 352
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 30.3 bits (65), Expect = 0.29
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 4 FLTFHHASDAKKAMEQLNGFELAGRPMKV 90
++ FH+ D +KA+++LN + GRP ++
Sbjct: 125 YVNFHNMEDGEKALDELNYTLIKGRPCRI 153
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTER 108
GF+ + + A+KA+++LN E G+ + VG ++
Sbjct: 304 GFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKK 339
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKV 90
GF+ + +A KA+ ++N LAG+P+ V
Sbjct: 407 GFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF+ F A A+E +NG L + + VG+ R +
Sbjct: 211 GFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRE 248
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.66
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF++F +A D +A+E++NG ++ + V + R D
Sbjct: 261 GFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 4 FLTFHHASDAKKAMEQLNGFELAGRPMKV 90
F+TF++ D KA+E LNG L R + V
Sbjct: 93 FVTFNNQEDVDKAIETLNGKTLDDREIVV 121
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 0.88
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERA 111
GF+ F +D K A+ ++ G RP++VG T ++
Sbjct: 231 GFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS 267
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERADGGSSTR 132
GF+ F + A AM +NGF L G +++ + D + R
Sbjct: 668 GFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVR 711
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 582 LYSRTR*LHSAYYCLRGSDSSTRQIL 659
++SRT L +YCL G++ +T Q++
Sbjct: 634 MFSRTNQLICLFYCLTGNEEATIQLI 659
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 31 AKKAMEQLNGFELAGRPMKV 90
A++AM LNG E+ GRP+ V
Sbjct: 161 AEEAMNSLNGTEIDGRPIAV 180
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 294 VAPPIATQCFMLNNMFDPATETNP----SWDIEIRDDVISECNKHGGVLHVYVDKASPQG 461
+APP+A + N F+ + +P WDI + + +C + GVL +D S
Sbjct: 147 LAPPLADADYSSLNPFNKESYFHPYCLIDWDITDNETNVMDCWQDSGVLLADLDVESSDV 206
Query: 462 NVY 470
+ Y
Sbjct: 207 SSY 209
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -2
Query: 536 PQTIFRANCYGGNGRRYCRTLAVHISLRRCFINIHMQHSTVFVAFTDNI 390
P I + Y GR + H+ ++R INIH Q + V+ + +
Sbjct: 432 PSFIHKVITYPSIGREFLAQF--HLVIKRVLINIHAQPNAVYCRLMEEV 478
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVT 102
GF++F + KA + NG + RP+K+ T
Sbjct: 73 GFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRAT 106
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 392 IIPYFNIPTWICFRCW 345
I+PY +IP +C CW
Sbjct: 155 ILPYLSIPAPMCTECW 170
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2
Query: 182 PVAPRSIPARSNSSAS 135
P AP SIPA SN+SAS
Sbjct: 233 PNAPPSIPANSNNSAS 248
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 345 PATETNPSWDIEIRDDVISECNKHGGVLHVYVDKASPQGN 464
PA+ NP D +I+D V N VL + +D A P+ N
Sbjct: 669 PASVMNPEIDKQIQDQVALATNSAMSVLTLLID-AVPKNN 707
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 354 ETNPSWDIEIRDDVISECNKHGGVLHVYVDKASPQGNV 467
+ P I+++DD+ E K G V +V + P G V
Sbjct: 263 DKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVV 300
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +3
Query: 279 SPQPQVAPPIATQCFMLNNMFDPATETNPSWDIEIRDDVISECNKHGGVLHVYVDKAS 452
SP P + P + T+ ML+ +F N + +DDVI N GG+ ++ + A+
Sbjct: 232 SPLPSI-PELVTE--MLSILFGEKNPDNSFVEFSSKDDVILLVNNMGGMSNLELGYAT 286
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 22 ASDAKKAMEQLNGFELAGRPMKV 90
A AK A++Q NG +G+P+ V
Sbjct: 152 AHSAKIAVQQANGLRFSGKPLSV 174
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 4 FLTFHHASDAKKAMEQLNGFELAGRPMKV 90
F+TF + A A+ LNG G +KV
Sbjct: 70 FITFENKCSADNAIASLNGSSFQGNTLKV 98
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF++F H +A +A+ LNG + + V +R D
Sbjct: 465 GFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKRED 502
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 498 RPSLLSDTCSTHFPEAMLYQHTHATLHRVC 409
R LL S+ FPE++ Y + + T R C
Sbjct: 3438 RMQLLETLNSSVFPESIYYDYFYKTFERYC 3467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,103
Number of Sequences: 5004
Number of extensions: 60538
Number of successful extensions: 217
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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