Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30599
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 107 8e-24
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 107 8e-24
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 31 0.82
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 31 0.82
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 30 1.4
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 30 1.4
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 30 1.4
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 30 1.4
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 30 1.4
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.9
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 30 1.9
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 30 1.9
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 30 1.9
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 29 2.5
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 29 3.3
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z48585-6|CAA88481.1| 284|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.7
U39849-1|AAA81045.2| 332|Caenorhabditis elegans Serpentine rece... 28 7.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.7
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 28 7.7
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 107 bits (257), Expect = 8e-24
Identities = 45/71 (63%), Positives = 56/71 (78%)
Frame = +3
Query: 300 PPIATQCFMLNNMFDPATETNPSWDIEIRDDVISECNKHGGVLHVYVDKASPQGNVYCKC 479
P IATQCF+L+NMFDP+ ET P+WD +IR+DVI +C HGG LHV+VDK S QGNVY KC
Sbjct: 272 PSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKC 331
Query: 480 PTIATAVASVT 512
P+I A +V+
Sbjct: 332 PSIVIAHQAVS 342
Score = 60.5 bits (140), Expect = 1e-09
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Frame = +1
Query: 7 LTFHHASDAKKAMEQLNGFELAGRPMKVGNVTE------RADGGSSTRFDADEL-DRAGI 165
+TF +A DA+K+ EQLN FELAGR +++ E + + S + D++ DR G
Sbjct: 172 ITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGF 231
Query: 166 DLGATGRLQLMFKLAEGTG 222
LGA GR QLM KLA+GTG
Sbjct: 232 SLGAGGRQQLMAKLAQGTG 250
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +2
Query: 509 NSLHGRWFAGRVITAAYVPLVNYHSLFPDAMTA 607
++LHGRWF+G+VITA YVP+ +YH LFPDA+ A
Sbjct: 342 SALHGRWFSGKVITANYVPVNSYHDLFPDAVHA 374
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 107 bits (257), Expect = 8e-24
Identities = 45/71 (63%), Positives = 56/71 (78%)
Frame = +3
Query: 300 PPIATQCFMLNNMFDPATETNPSWDIEIRDDVISECNKHGGVLHVYVDKASPQGNVYCKC 479
P IATQCF+L+NMFDP+ ET P+WD +IR+DVI +C HGG LHV+VDK S QGNVY KC
Sbjct: 417 PSIATQCFLLSNMFDPSKETEPAWDHDIREDVIEQCLAHGGALHVFVDKGSEQGNVYVKC 476
Query: 480 PTIATAVASVT 512
P+I A +V+
Sbjct: 477 PSIVIAHQAVS 487
Score = 60.5 bits (140), Expect = 1e-09
Identities = 36/79 (45%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Frame = +1
Query: 7 LTFHHASDAKKAMEQLNGFELAGRPMKVGNVTE------RADGGSSTRFDADEL-DRAGI 165
+TF +A DA+K+ EQLN FELAGR +++ E + + S + D++ DR G
Sbjct: 317 ITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAPAVKKEEASIHQRSLDDVGDRQGF 376
Query: 166 DLGATGRLQLMFKLAEGTG 222
LGA GR QLM KLA+GTG
Sbjct: 377 SLGAGGRQQLMAKLAQGTG 395
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/33 (66%), Positives = 29/33 (87%)
Frame = +2
Query: 509 NSLHGRWFAGRVITAAYVPLVNYHSLFPDAMTA 607
++LHGRWF+G+VITA YVP+ +YH LFPDA+ A
Sbjct: 487 SALHGRWFSGKVITANYVPVNSYHDLFPDAVHA 519
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 4 FLTFHHASDAKKAMEQLNGFELAGRPMKV 90
F+ F A++A+EQ+NG E GRP++V
Sbjct: 50 FIEFAEEGSAQRAVEQMNGAEFNGRPLRV 78
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKV 90
GF+ F A+ A+ LNG+EL+GR ++V
Sbjct: 62 GFIEFPDIQTAEVAIRNLNGYELSGRILRV 91
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTER 108
GF+T + DA +A + NG + GR ++V T+R
Sbjct: 24 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTER 108
GF+T + DA +A + NG + GR ++V T+R
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTER 108
GF+T + DA +A + NG + GR ++V T+R
Sbjct: 142 GFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF+++ +A A A+ +NGF++ + +KV +R +
Sbjct: 379 GFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGN 416
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF+++ +A A A+ +NGF++ + +KV +R +
Sbjct: 543 GFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGN 580
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF+++ +A A A+ +NGF++ + +KV +R +
Sbjct: 543 GFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGN 580
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF+++ +A A A+ +NGF++ + +KV +R +
Sbjct: 472 GFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGN 509
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF+++ +A A A+ +NGF++ + +KV +R +
Sbjct: 543 GFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGN 580
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERADGGSSTRF 135
GF+ F DA+ A+ LNG EL G + + R GG F
Sbjct: 39 GFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDRGGF 83
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERADGGSSTRF 135
GF+ F DA+ A+ LNG EL G + + R GG F
Sbjct: 39 GFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDRGGF 83
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERADGGSSTRF 135
GF+ F DA+ A+ LNG EL G + + R GG F
Sbjct: 39 GFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGDRGGF 83
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERA 111
GF+ F A+ A++++NG LAG+ + VG RA
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRA 199
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERA 111
GF+ F A+ A++++NG LAG+ + VG RA
Sbjct: 100 GFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRA 136
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERA 111
GF+ F A+ A++++NG LAG+ + VG RA
Sbjct: 163 GFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRA 199
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 7 LTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
+ F S A A+ L GF G+PM++ E +D
Sbjct: 55 IVFKEVSSASNALRALQGFPFYGKPMRIQYAREDSD 90
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVTERAD 114
GF+++ DA++A++++NG L R ++ T + D
Sbjct: 176 GFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPD 213
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVG-NVTERADGGSSTRFDADELDR 156
GF+ F+ A DAK A++ + G L G +++ + E AD G+ R + + ++
Sbjct: 692 GFVQFYTAFDAKTALKDMQGELLDGHSLELKISHRENADKGALKRKEVKQKEQ 744
>Z48585-6|CAA88481.1| 284|Caenorhabditis elegans Hypothetical
protein ZK673.6 protein.
Length = 284
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -2
Query: 200 NINCKRPVAPRSIPARSNSSASNRVLDPPSARSVTFPTFIGRPANSKPFNCSIAFLASLA 21
N+ PV+P ++ A N ++N P + + F+G+ N FN + F + +
Sbjct: 3 NLPTSTPVSPSNL-AEENPKSNN-----PESSEIEDANFVGKILNKDQFNLNEQFSSDIE 56
Query: 20 W 18
W
Sbjct: 57 W 57
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVT 102
GF+ F DA A++ LN +L G+P+KV +
Sbjct: 57 GFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>U39849-1|AAA81045.2| 332|Caenorhabditis elegans Serpentine
receptor, class h protein39 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 458 LRRCFINIHMQHSTVFVAFTDNIIPYFNIPTWI 360
++RC IN+ + + ++ +IPYF IPT +
Sbjct: 49 MKRCLINLAFWTRAMDLMYSFLLIPYFFIPTLV 81
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKVGNVT 102
GF+ F DA A++ LN +L G+P+KV +
Sbjct: 67 GFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 100
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 1 GFLTFHHASDAKKAMEQLNGFELAGRPMKV 90
GF++F + D +AM +++G + RP+K+
Sbjct: 247 GFVSFRDSEDYVRAMREMDGKYVGNRPIKL 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,520
Number of Sequences: 27780
Number of extensions: 365836
Number of successful extensions: 1147
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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