Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30599
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   2.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.0  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 441 DKASPQGNVYCKC 479
           D AS  GNVYCKC
Sbjct: 97  DSAS-SGNVYCKC 108


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 301 LLLQHNASCSITCLIQQRK 357
           L + H+A C+I CL Q+RK
Sbjct: 74  LSINHSA-CAIRCLAQRRK 91


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 518 ANCYGGNGRRYC 483
           A CYGG  R+ C
Sbjct: 264 ATCYGGRNRKIC 275


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 52  LNGFELAGRPMKVGNVTER 108
           LNG E AGRP  +   ++R
Sbjct: 318 LNGLEFAGRPQNLQLQSQR 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,190
Number of Sequences: 438
Number of extensions: 4276
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)