Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30598
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 97 2e-21
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 94 9e-21
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 27 1.1
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 1.5
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 27 1.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 2.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 4.6
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 6.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 6.1
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 6.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 6.1
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 6.1
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.0
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 96.7 bits (230), Expect = 2e-21
Identities = 41/62 (66%), Positives = 51/62 (82%)
Frame = +1
Query: 70 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 249
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 250 NG 255
NG
Sbjct: 66 NG 67
Score = 69.3 bits (162), Expect = 3e-13
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +3
Query: 246 PKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 425
P + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 426 SQE 434
SQE
Sbjct: 125 SQE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 94.3 bits (224), Expect = 9e-21
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = +1
Query: 70 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 249
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 250 NG 255
NG
Sbjct: 66 NG 67
Score = 69.7 bits (163), Expect = 2e-13
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +3
Query: 246 PKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 425
P + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 426 SQE 434
SQE
Sbjct: 125 SQE 127
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 144 TPIPLKFV--IAIRLMPDKSLRP 82
TP+P+KFV IA+ MP +LRP
Sbjct: 427 TPVPIKFVADIAMHSMPRVALRP 449
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 410 RIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 315
R+ HSD + + +F DQ +RR + LC +L
Sbjct: 148 RLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPAC1250.04c |atl1||alkyltransferase-like protein
Atl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 18 VSKRNIQDGYKTCLQADNRQKEDEEIYQASIG 113
+SKR+I G + Q D ++E EIYQ S+G
Sbjct: 66 ISKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 2.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 210 WLRFQQEDPSYAPKWFRKVLVHNVKELEI-LMMQNRKYC-AEIAHGVS-SKKRKLIV 371
WLRF E P + F+ +VH + E E ++ + C E +G S RK+++
Sbjct: 1239 WLRFVDESPQTLFQTFQNPVVHYLDEAEASSSLKEEQLCRQEFCYGKDYSNVRKMLL 1295
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.4 bits (53), Expect = 4.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 252 WFRKVLVHNVKEL-EILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 428
W +VL + E+ EI +Q A + G +SKK ++ E ++LSI T ++
Sbjct: 579 WMARVLGDDKAEISEISKVQTSIKSATMIKGSTSKKVAVVSENNRRLSIFDTRSSEFSEK 638
Query: 429 QE 434
+E
Sbjct: 639 EE 640
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 354 SSKRHHERSLRSTSCFASSRFPAL*H 277
+S HER +R + S+RFP L H
Sbjct: 446 TSNTMHERHIRLLVSYLSNRFPILLH 471
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 6.1
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +1
Query: 61 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRH 240
R T VK+R K I+ S+ + KP G R R+ K Y +P G + +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALP--GLRTKLRRNF 595
Query: 241 MLPNGSVRS 267
LP+ V++
Sbjct: 596 DLPSDHVKA 604
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 30 NIQDGYKTCLQADNRQKEDEEIYQASIGS 116
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 94 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 30 NIQDGYKTCLQADNRQKEDEEIYQASIGS 116
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +3
Query: 321 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 407
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,836
Number of Sequences: 5004
Number of extensions: 36210
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -