Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30598
(485 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 154 5e-40
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 5.3
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 5.3
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 5.3
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 5.3
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 5.3
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 5.3
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 5.3
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 5.3
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.2
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 154 bits (373), Expect = 5e-40
Identities = 68/72 (94%), Positives = 70/72 (97%)
Frame = +1
Query: 40 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 219
MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1 MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60
Query: 220 SNKKTRHMLPNG 255
SNKKTRHMLP G
Sbjct: 61 SNKKTRHMLPTG 72
Score = 115 bits (277), Expect = 2e-28
Identities = 57/65 (87%), Positives = 60/65 (92%)
Frame = +3
Query: 246 PKWFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 425
P FRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIRVT A+ARLR
Sbjct: 70 PTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLR 129
Query: 426 SQENE 440
SQENE
Sbjct: 130 SQENE 134
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 5.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 308 KQEVLRRDRSWCLFEEAEAD 367
++E LRR R W + +E E +
Sbjct: 32 QEERLRRRREWMIQQERERE 51
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 317 LPVLHHQDFQLFNI 276
LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 20.6 bits (41), Expect = 9.2
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 317 LPVLHHQDFQLFNI 276
LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,239
Number of Sequences: 438
Number of extensions: 2446
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -