Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30596
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YZM8 Cluster: AP endonuclease 1, putative; n=2; Plasm...    38   0.24 

>UniRef50_Q4YZM8 Cluster: AP endonuclease 1, putative; n=2;
           Plasmodium (Vinckeia)|Rep: AP endonuclease 1, putative -
           Plasmodium berghei
          Length = 559

 Score = 37.9 bits (84), Expect = 0.24
 Identities = 20/92 (21%), Positives = 46/92 (50%)
 Frame = +3

Query: 138 LGSNTFFFVSVS*ACVTIFISYRKFIIKNQHASKIENEMYFGCLDNDKGLIMTKFYGKII 317
           LG+N   +   S  C    ++++K  IK     + E + +   L+N   +  +KF  K++
Sbjct: 55  LGANKHIYSKFSSVCEQKKLAHKKIAIKKWGIERNEKKKFTISLNNYNKIQQSKFMSKMV 114

Query: 318 RSTKMSET*KD*CTIFEPERVM*YINLRETQQ 413
           +  K S   ++ C+I   + +  ++NL++ ++
Sbjct: 115 KENKASTKNENKCSINNTQDIRNFMNLKKEEK 146


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,909,243
Number of Sequences: 1657284
Number of extensions: 9485857
Number of successful extensions: 18658
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18650
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)