Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30595
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...    28   1.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    28   1.5  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   7.8  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.8  

>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 592 IPEGPCPVNVDLFKAVKEWKAV-DVAPNTHFGSSRSTNGA--SRYFKH 458
           IP+  CP++  +FKA   +K V D+ P +  G+S     A  +R F H
Sbjct: 102 IPKRSCPLDAIVFKAGSHYKTVADLPPGSVVGTSSIRRRALLARNFPH 149


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -1

Query: 374  RFRSGGRFCEARLLLGFVLATSSGLSPVSSPTC*GSADIALKAISLGRKKKQ 219
            +F+S   FC+   +LG++   S+    +++ T  G  D A  A+++  + K+
Sbjct: 868  QFKSSNLFCDNMKMLGYIPRASTFAHLINNSTRRGDTDDATTALNIFEETKR 919


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 154 CFSFSSVPLYFESVVKYTTAIQAIIINSPRNWLQLVIYKFLERE 23
           C S S++  +   +V+Y+    + I  +   W +LV  K +ER+
Sbjct: 715 CNSSSAIYSFLSDLVQYSFQPDSFIKEAADRWSKLVTEKSIERK 758


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = -2

Query: 592 IPEGPCPVNVDLFKAVKEWKAVDVAPNTHFGSSRSTNGASRY-----FKHRSPFRVTRVN 428
           +P+ P PV  DLF  +     + V  ++       + G   +      ++  PF + R+ 
Sbjct: 29  VPKSPAPVRTDLFSKIPAGTKIQVGSHSVIIQRYLSEGGFSHVYLALLENEKPFVLKRIY 88

Query: 427 *PSDTA 410
            P  TA
Sbjct: 89  VPDKTA 94


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 163 LDLCFSFSSVPLYFESVVKYTTAIQA 86
           ++ CFS S   +Y +S  KY  +I+A
Sbjct: 888 IESCFSLSIQSVYMQSQFKYNNSIRA 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,631
Number of Sequences: 5004
Number of extensions: 55346
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)