Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30595
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical ...    33   0.19 
U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical pr...    30   1.3  

>AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical
           protein Y45F10B.14 protein.
          Length = 320

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -2

Query: 181 VHSNVLLDLCFSFSSVPLYFESVVKYTTAIQAIIINSPRNWLQLVIYKFLEREPLCFM 8
           VHSN  L L F++    L      + T  I   +   P ++LQL++Y+F E EPL  +
Sbjct: 100 VHSNYSLVLSFAYRYYILRKPEPQRKTVLIVLFLTYLP-SFLQLILYQFAESEPLAII 156


>U64847-3|AAB04872.1|  350|Caenorhabditis elegans Hypothetical
           protein F08F3.6 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -2

Query: 151 FSFSSVPLYFESVVKYTTAIQAIIINSPRNWLQLVIYKFLEREPLCFMHV 2
           F  S   +   +++K   A   I+I+  +    ++ Y   EREP  F HV
Sbjct: 24  FELSQSSMRMPTLIKSIMAFDRILIDLTKERKSIIFYNNWEREPAIFFHV 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,116,941
Number of Sequences: 27780
Number of extensions: 309418
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)