Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30594
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 70 4e-13
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 69 5e-13
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 31 0.17
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 28 1.6
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 27 2.8
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 3.8
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 26 6.6
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 69.7 bits (163), Expect = 4e-13
Identities = 34/69 (49%), Positives = 42/69 (60%)
Frame = +2
Query: 281 NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYF 460
+ KGIP+FW +NV LSEM+ DE L L DI++ E P F LEF FA N +F
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP-GFKLEFEFAENPFF 218
Query: 461 TNTVLTKEY 487
TN +LTK Y
Sbjct: 219 TNKILTKTY 227
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +1
Query: 553 KGCEINWNAGXXXXXXXXXXXXXXXSRGSVRTVTKSVQADSFFNFFNPPTLPED 714
+G +++W + R V SV DSFFNFFNPPT P +
Sbjct: 245 EGDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSE 298
Score = 31.9 bits (69), Expect = 0.100
Identities = 19/81 (23%), Positives = 35/81 (43%)
Frame = +3
Query: 6 LRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 185
LR LQK + D+E++F E+ R+ +V G EP ++E D
Sbjct: 82 LRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEEIKKGEAADE 141
Query: 186 EEEELARAVQNAAITEGEEKK 248
E++ + ++ G++ K
Sbjct: 142 NEKKEPTSSESKKQEGGDDTK 162
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 69.3 bits (162), Expect = 5e-13
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +2
Query: 278 PNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK-VQMHEDPISFTLEFYFAPNE 454
P+ KGIP+FW NV ++ EM+ DE +L+ L DI+ + D + LEF F N+
Sbjct: 161 PDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIRFTNLSGDVHGYKLEFEFDSND 220
Query: 455 YFTNTVLTKEYLMK 496
YFTN +LTK Y K
Sbjct: 221 YFTNKILTKTYYYK 234
Score = 33.9 bits (74), Expect = 0.025
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 643 RTVTKSVQADSFFNFFNPPTLPEDPNSTVASD 738
R V +V DSFFNFF+PP L +D + D
Sbjct: 280 RLVRTTVPNDSFFNFFSPPQLDDDESDDGLDD 311
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 31.1 bits (67), Expect = 0.17
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +2
Query: 284 VKGIPDFWYNIFRNVS-MLSEMMQEHDEPILKCLQDIKVQM--HEDPISFTLEFYFAPNE 454
+K I +FW + +S+ + D +L+ L++I V+ ++P + F PNE
Sbjct: 43 LKTINNFWVVVLEAAGDEISQYITPEDSVLLEKLENIYVERFNEKEPRDVRISLTFQPNE 102
Query: 455 YFTNTVLTKEYLMKCKPDK 511
Y + LT ++ K +K
Sbjct: 103 YLQDDNLTLVKEVRIKEEK 121
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = -1
Query: 324 FLNMLYQKSGIPFTLGSI 271
+LN+L +KSG+PF+LG +
Sbjct: 299 YLNILVKKSGMPFSLGVV 316
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = -1
Query: 471 TVFV---KYSFGAK*-NSKVKLMGSSCICTLISCKH 376
T+FV KYSF +K SK K SC LISC H
Sbjct: 354 TLFVSLRKYSFSSKNVQSKEKSKIMSCFTLLISCAH 389
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 202 LGRYKMLPSLRVRKRRMTGYRASNGSQCKGYPRLLVQHIQEC 327
L + LP+ R R YR SNG + Y L V+ IQ C
Sbjct: 473 LTNFSHLPTARSVSRT---YRLSNGKSIQYYSTLFVRLIQSC 511
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 628 SRGSVRTVTKSVQADSFFNFFNPPTLPEDPN 720
S ++R++TK VQ SF+ F P L P+
Sbjct: 42 SEEAIRSITKIVQDLSFYEFSGSPALLLHPD 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,785
Number of Sequences: 5004
Number of extensions: 56511
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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