Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30594
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 79 3e-15
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 78 9e-15
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 76 3e-14
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 71 7e-13
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 60 2e-09
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 51 1e-06
05_03_0077 + 8200529-8200541,8200658-8200701,8200793-8200888,820... 39 0.005
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 31 0.74
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 5.2
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 79.4 bits (187), Expect = 3e-15
Identities = 36/73 (49%), Positives = 47/73 (64%)
Frame = +2
Query: 275 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 454
D + KG+PDFW + +LSE +QE DEP LK L+DIK +DP F L+F+F N
Sbjct: 128 DADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNP 187
Query: 455 YFTNTVLTKEYLM 493
+F N+VLTK Y M
Sbjct: 188 FFKNSVLTKTYHM 200
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 535 PEIYSCKGCEINWNAGXXXXXXXXXXXXXXXSRGSVRTVTKSVQADSFFNFFNPPTLPED 714
P + G EI W G S+ + + +TK+ +SFFNFF+PP +P+D
Sbjct: 206 PILEKAIGTEIEWYPGKNLTQKILKKKPKKGSKNA-KPITKTEVCESFFNFFSPPQVPDD 264
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 77.8 bits (183), Expect = 9e-15
Identities = 37/76 (48%), Positives = 46/76 (60%)
Frame = +2
Query: 266 PPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFA 445
P KG+P+FW N +N +LSE +QE DE LK L+DIK +P F LEFYF
Sbjct: 122 PAEQKEEKGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFD 181
Query: 446 PNEYFTNTVLTKEYLM 493
N +F N+VLTK Y M
Sbjct: 182 TNPFFKNSVLTKTYHM 197
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 520 LEFEGPEIYSCKGCEINWNAGXXXXXXXXXXXXXXXSRGSVRTVTKSVQADSFFNFFNPP 699
++ + P + G EI W G S+ + + +TK+ +SFFNFF+PP
Sbjct: 198 IDEDEPILEKAIGTEIEWFPGKCLTQKVLKKKPKKGSKNT-KPITKTENCESFFNFFSPP 256
Query: 700 TLPED 714
+P+D
Sbjct: 257 QVPDD 261
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/88 (42%), Positives = 51/88 (57%)
Frame = +2
Query: 254 QAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLE 433
Q + P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F E
Sbjct: 197 QKLYGPLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFE 256
Query: 434 FYFAPNEYFTNTVLTKEYLMKCKPDKRV 517
F+F N +F N VLTK Y M + D+ +
Sbjct: 257 FFFYTNPFFKNQVLTKTYHMIDEDDEPI 284
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +1
Query: 523 EFEGPEIYSCKGCEINWNAGXXXXXXXXXXXXXXXSRGSVRTVTKSVQADSFFNFFNPPT 702
E + P + G EI W+ G S S + +TK+ + +SFFNFF+PP
Sbjct: 279 EDDEPILEKAIGTEIEWHPGYCLTQEVLTKE----SSESTKPITKTEECESFFNFFSPPQ 334
Query: 703 LPED 714
+P+D
Sbjct: 335 VPDD 338
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 71.3 bits (167), Expect = 7e-13
Identities = 34/77 (44%), Positives = 46/77 (59%)
Frame = +2
Query: 287 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 466
KG+PDFW +N +L+E + E DE LK L+DIK +DP F EF+F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 467 TVLTKEYLMKCKPDKRV 517
VLTK Y M + D+ +
Sbjct: 163 QVLTKTYHMIDEDDEPI 179
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +1
Query: 523 EFEGPEIYSCKGCEINWNAGXXXXXXXXXXXXXXXSRGSVRTVTKSVQADSFFNFFNPPT 702
E + P + G EI W+ G S S + +TK+ + +SFFNFF+PP
Sbjct: 174 EDDEPILEKAIGTEIEWHPGNCLTQEVLTKE----SSESTKPITKTEEYESFFNFFSPPQ 229
Query: 703 LPED 714
+PED
Sbjct: 230 VPED 233
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 284 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 460
+K IPDFW F + ML E++ E D+ I K L+ I V ED S +++ F+PN YF
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYF 131
Query: 461 TNTVLTKEY 487
+T LTK Y
Sbjct: 132 EDTKLTKTY 140
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +2
Query: 284 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 460
++ IPDFW F + +LSE++ E D+ + K L+ + V +D S +++ F+ N YF
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYF 136
Query: 461 TNTVLTKEY 487
+ LTK Y
Sbjct: 137 EDKELTKTY 145
>05_03_0077 +
8200529-8200541,8200658-8200701,8200793-8200888,
8201585-8201639,8201753-8201817,8202309-8202434,
8202742-8202903
Length = 186
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +1
Query: 628 SRGSVRTVTKSVQADSFFNFFNPPTLPED 714
S S + +TK+ + +SFFNFF+PP +P+D
Sbjct: 97 SSESTKPITKTEECESFFNFFSPPQVPDD 125
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 637 SVRTVTKSVQADSFFNFFNPP-TLPEDPNSTV 729
S+RT TK + D FN +PP L E PNS +
Sbjct: 186 SIRTFTKEAEKDHLFNCGDPPRILNEPPNSAI 217
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 117 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 239
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,538
Number of Sequences: 37544
Number of extensions: 340317
Number of successful extensions: 893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -