Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30594
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    85   4e-17
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    58   5e-09
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    58   5e-09
U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   4.6  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 37/78 (47%), Positives = 48/78 (61%)
 Frame = +2

Query: 275 DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 454
           DP+ KGI DFW    R   +++E ++EHD PIL  L D+     +DP  F +EF+FA N 
Sbjct: 107 DPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNP 166

Query: 455 YFTNTVLTKEYLMKCKPD 508
           YF N VLTK YL+   PD
Sbjct: 167 YFKNQVLTKTYLLGFDPD 184



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/70 (34%), Positives = 35/70 (50%)
 Frame = +1

Query: 511 ESPLEFEGPEIYSCKGCEINWNAGXXXXXXXXXXXXXXXSRGSVRTVTKSVQADSFFNFF 690
           E+PL+F+GP +    G  I W  G               +    + +TK+V+ADSFFNFF
Sbjct: 186 EAPLQFDGPHVIRAVGDTIEWEDGKNVTKKAVKKKQKKGANAG-KFLTKTVKADSFFNFF 244

Query: 691 NPPTLPEDPN 720
            PP   ++ N
Sbjct: 245 EPPKSKDERN 254



 Score = 36.3 bits (80), Expect = 0.023
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +3

Query: 3   ALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDD 182
           AL+ LQ + + IE+ FY  VH                R  IV G  EP  ++   P  + 
Sbjct: 32  ALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEG 91

Query: 183 TEEEELARAVQNA-AITEGEEKKDDRLSSLQ 272
            E ++LA   + A A    +  KD  L++L+
Sbjct: 92  LEGDQLAELYKAAEADPSAKGIKDFWLTALR 122


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 293 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 469
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 470 VLTKEY 487
           V+TK Y
Sbjct: 137 VITKSY 142


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 293 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 469
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 470 VLTKEY 487
           V+TK Y
Sbjct: 137 VITKSY 142


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 293 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 469
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 470 VLTKEY 487
           V+TK Y
Sbjct: 137 VITKSY 142


>U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical
           protein C09B9.2 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 513 LLSGLHFIKYSLVSTVFVKYSFGAK*NSKVKLMGSSCICTLISCKHF 373
           L    HF+   L+ + F++ SF +K     ++ G S + ++ +C HF
Sbjct: 129 LFLSYHFVLLFLMFSFFLQSSFSSKSRFVEQIFGMSAVSSMSTCAHF 175


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 314  IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 421
            IF  V +  + +  +  P+L  L  ++V  H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,856
Number of Sequences: 27780
Number of extensions: 319676
Number of successful extensions: 1047
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)