Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30593
(551 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 181 5e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 116 3e-27
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 108 5e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 7e-23
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 1e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 60 2e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 47 2e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 33 0.028
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 32 0.065
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.065
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 30 0.20
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.34
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.80
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 1.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 3.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.2
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 5.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 5.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 7.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 9.8
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 181 bits (441), Expect = 5e-47
Identities = 80/85 (94%), Positives = 81/85 (95%)
Frame = +2
Query: 2 SGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEH 181
SGMCKAGFAG DAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEH
Sbjct: 14 SGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEH 73
Query: 182 GIVTNWDDMEXIWHHTFYNELRVAP 256
GIV NWDDME IWHHTFYNELRVAP
Sbjct: 74 GIVNNWDDMEKIWHHTFYNELRVAP 98
Score = 181 bits (440), Expect = 7e-47
Identities = 86/99 (86%), Positives = 90/99 (90%)
Frame = +1
Query: 253 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 432
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 433 GVSHTVPIYEGYALPHAILRLDLAGLTSQTYLMKILTER 549
GV+HTVPIYEGYALPHAI+RLDLAG YLMKIL ER
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMER 196
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 116 bits (278), Expect = 3e-27
Identities = 53/99 (53%), Positives = 70/99 (70%)
Frame = +1
Query: 253 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 432
P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 433 GVSHTVPIYEGYALPHAILRLDLAGLTSQTYLMKILTER 549
GV+H VP+YE L H + RLD+AG + YL+ +L +
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRK 196
Score = 81.4 bits (192), Expect = 8e-17
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Frame = +2
Query: 2 SGMCKAGFAGXDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI 175
+G K G+A + PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+
Sbjct: 12 TGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPM 71
Query: 176 EHGIVTNWDDMEXIWHHTFYNELRVAPR 259
E+GI+ ++++M +W +TF+ +L++ PR
Sbjct: 72 ENGIIRDFEEMNQLWDYTFFEKLKIDPR 99
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 108 bits (260), Expect = 5e-25
Identities = 48/92 (52%), Positives = 68/92 (73%)
Frame = +1
Query: 253 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 432
PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
Query: 433 GVSHTVPIYEGYALPHAILRLDLAGLTSQTYL 528
G++H+VPIY+G+++P AI + ++ G YL
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Score = 95.9 bits (228), Expect = 4e-21
Identities = 41/80 (51%), Positives = 56/80 (70%)
Frame = +2
Query: 2 SGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEH 181
SG KAGFAG D P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE
Sbjct: 18 SGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIER 77
Query: 182 GIVTNWDDMEXIWHHTFYNE 241
GI+ NW DME IW + + ++
Sbjct: 78 GIIQNWSDMEEIWSYIYSDQ 97
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (242), Expect = 7e-23
Identities = 50/109 (45%), Positives = 69/109 (63%), Gaps = 8/109 (7%)
Frame = +1
Query: 247 CRPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------- 405
C PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS +
Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRS 178
Query: 406 -TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGLTSQTYLMKILTER 549
TG V+DSGDGV+H +P+ EGY + +I + LAG ++ +L +R
Sbjct: 179 LTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 51.2 bits (117), Expect = 1e-07
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 24/111 (21%)
Frame = +2
Query: 2 SGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------------- 112
+G K G+AG DAP VFP+++ R G G M K
Sbjct: 14 TGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDL 72
Query: 113 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEXIWHHTFYNELRVAPRN 262
D ++G++A K +L YPI HG + NWD ME W + + LR P +
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPED 123
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.7 bits (163), Expect = 3e-13
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Frame = +1
Query: 259 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGD 432
EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 433 GVSHTVPIYEGYALPHAILRLDLAGLTSQTYLMKI 537
SH +P+ G + R+ G S +YL+K+
Sbjct: 175 AASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
Score = 40.7 bits (91), Expect = 1e-04
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 SGMCKAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIE 178
S +AG+ G P+ VF ++V R R + + + + VG++ + G ++ + P E
Sbjct: 33 SWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFE 88
Query: 179 HGIVTNWDDMEXIWHHTF 232
+++NWD ME + +TF
Sbjct: 89 RNVISNWDLMEQVLDYTF 106
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 1e-11
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +1
Query: 214 DLASY-LLQ*AACRPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 390
DL Y L Q P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +
Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAF 141
Query: 391 ASGRTTGIVLDSGDGVSHTVPIYEGYAL 474
ASG+ T ++D G S IY+G+ L
Sbjct: 142 ASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 35.5 bits (78), Expect = 0.005
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +2
Query: 14 KAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 193
+ GF+G D P+ V PS G + G + Y+ +S G + +K I +G V
Sbjct: 24 RIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVE 75
Query: 194 NWDDMEXIWHHTFYNELRVAP 256
NWD +W + +L+ P
Sbjct: 76 NWDVTVDLWRYGLEQQLKTNP 96
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 60.1 bits (139), Expect = 2e-10
Identities = 25/85 (29%), Positives = 49/85 (57%)
Frame = +1
Query: 253 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 432
P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGS 158
Query: 433 GVSHTVPIYEGYALPHAILRLDLAG 507
+ P+ +G + I + LAG
Sbjct: 159 DNASVTPVVDGLIIRKGIFKQSLAG 183
Score = 35.9 bits (79), Expect = 0.004
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = +2
Query: 5 GMC--KAGFAGXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYP 172
G C + G+AG ++P + PS + GV + ++ YV DE Q I + +K
Sbjct: 18 GSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNG 71
Query: 173 IEHGIVTNWDDMEXIWHHTFYNELRVAP 256
+GI+ +W+ W +L+V P
Sbjct: 72 KSNGIIQDWESTLYTWERGLKEKLQVNP 99
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/95 (30%), Positives = 43/95 (45%)
Frame = +1
Query: 262 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 441
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 442 HTVPIYEGYALPHAILRLDLAGLTSQTYLMKILTE 546
PI +G + A +L L G +L +L E
Sbjct: 207 DITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241
Score = 25.8 bits (54), Expect = 4.2
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 170 PIEHGIVTNWDDMEXIWHHTF 232
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 33.1 bits (72), Expect = 0.028
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 412 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGLTSQTYLMKILTER 549
+V+DSG +H +P+ + A+ R+D+ G YL ++++ R
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.9 bits (69), Expect = 0.065
Identities = 20/104 (19%), Positives = 47/104 (45%)
Frame = +1
Query: 229 LLQ*AACRPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 408
LLQ + ++ V+ L + EK+ I+F + + +++ + + +G +
Sbjct: 233 LLQIPVSQLSQYSVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSA 292
Query: 409 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGLTSQTYLMKIL 540
V+D G + + EG +P++ ++++ G MK+L
Sbjct: 293 ACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLL 336
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.065
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 353 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 487
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +2
Query: 350 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 487
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 350 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 487
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 350 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 487
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 30.3 bits (65), Expect = 0.20
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 29 GXDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 172
G PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.34
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 329 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 487
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 0.80
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 329 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 487
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.8 bits (54), Expect = 4.2
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 341 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 487
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +2
Query: 332 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTP 484
S ++ P S S C+ T +PP T P ST T +P P
Sbjct: 324 STGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.80
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 374 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 478
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 374 PCSRCTRPVVPPVSCWTPATVSPTPCPST 460
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 350 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 457
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 129 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 13
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 271 LLTEAPLNPKANREKMTQIMFETFN 345
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 137 VPHLLHKSPSVPYRPSRPDGGA 72
+ L+ K+PS PY SRP A
Sbjct: 306 IDQLISKAPSYPYSSSRPSASA 327
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 166 FEGQDTSFALCLISYIRVLLSHTDHHA 86
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 356 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 499
C +PS+ C + PV + T S TP P+T + +PTP+ T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 228 PSTMSCVSPRGTPR 269
P TMSC+SP GT R
Sbjct: 160 PDTMSCLSPWGTER 173
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 285 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 434
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +2
Query: 368 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTRDT-HSPTPSCVWTWPV 508
S+ S T P PP + T PA SP P P +T H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPPTASGTRVPPV 948
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 389 TRPVVPPVSCWTPATVSPTPCPSTRDT 469
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 371 KPCSRCTRPVVPPVSCWTPATVSPTPCP 454
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 332 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 478
S+H + +PS + P+ P ++ W P T PT P + + + P
Sbjct: 244 SQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMT-QPTFQPPSANVYQP 291
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 89 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 175
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 371 WMATYMAGVLNVSNMIWVIFSLLALGLRGASVSRTGCSSGR 249
W + AG + S++I ++LAL LR S+SR G S R
Sbjct: 147 WQSYVTAGAIG-SDLI----AILALCLRSVSISRIGQKSAR 182
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 9.8
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 424 SGDGVSHTVPIYEGYALP 477
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,085
Number of Sequences: 5004
Number of extensions: 53129
Number of successful extensions: 211
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -