Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30591
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    38   4e-05
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    36   1e-04
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                33   0.001
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    31   0.005
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    31   0.005
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    30   0.009
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.47 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.6  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 38.3 bits (85), Expect = 4e-05
 Identities = 22/59 (37%), Positives = 32/59 (54%)
 Frame = +3

Query: 12  EAMSAIHAKGIVHRDLKPQNILLTHSILPPRTPHPSDITLKIADFGFARFLXEGNMAVT 188
           EA   +H++ I++RDLKP+N+LL            S   +K+ DFGFA+ L  G    T
Sbjct: 477 EAFDYLHSRNIIYRDLKPENLLL-----------DSQGYVKLVDFGFAKRLDHGRKTWT 524



 Score = 27.5 bits (58), Expect = 0.066
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 259 WSLGTIVYQCLTGKAPF 309
           WSLG ++++ LTG  PF
Sbjct: 549 WSLGVLMFELLTGTPPF 565



 Score = 25.8 bits (54), Expect = 0.20
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 194 GSPMYMAPEVIMSLKYDAKA 253
           G+P Y+APEVI++  +D  A
Sbjct: 527 GTPEYVAPEVILNKGHDISA 546


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 36.3 bits (80), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +3

Query: 12  EAMSAIHAKGIVHRDLKPQNILLTHSILPPRTPHPSDITLKIADFGFA 155
           E++   H  G+VHRDLKP+N+LL                +K+ADFG A
Sbjct: 20  ESVHHCHHNGVVHRDLKPENLLLASK--------AKGAAVKLADFGLA 59



 Score = 23.0 bits (47), Expect = 1.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 256 LWSLGTIVYQCLTGKAPF 309
           +W+ G I+Y  L G  PF
Sbjct: 95  IWACGVILYILLVGYPPF 112



 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +2

Query: 194 GSPMYMAPEVIMSLKYDAKA---ACG 262
           G+P Y++PEV+    Y       ACG
Sbjct: 74  GTPGYLSPEVLKKEPYGKPVDIWACG 99


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 15  AMSAIHAKGIVHRDLKPQNILLTHSILPPRTPHPSDITL 131
           A+   H  GIVH D+KP+NIL++ +  P  T   S + +
Sbjct: 167 ALQFCHNAGIVHADVKPKNILMSKNGQPKLTDFGSSVLI 205



 Score = 24.6 bits (51), Expect = 0.47
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = +1

Query: 208 HGSRSHNVPEIRRQS------SLWSLGTIVYQCLTGKAPF 309
           +G+  +  PE+ +Q+       ++SLG + +Q L  K PF
Sbjct: 215 YGTPGYTAPEVIKQNRPTPAADIYSLGIVAWQMLFRKLPF 254



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 194 GSPMYMAPEVI 226
           G+P Y APEVI
Sbjct: 216 GTPGYTAPEVI 226


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 31.1 bits (67), Expect = 0.005
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 12  EAMSAIHAKGIVHRDLKPQNILL 80
           E +  +H++G+VHRD+K +N+LL
Sbjct: 708 EGIRYLHSQGLVHRDVKLKNVLL 730



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 191 LGSPMYMAPEVIMSLKYDA 247
           +G+P++MAPE ++S  YD+
Sbjct: 755 VGTPVHMAPE-LLSGHYDS 772


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 31.1 bits (67), Expect = 0.005
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 12  EAMSAIHAKGIVHRDLKPQNILL 80
           E +  +H++G+VHRD+K +N+LL
Sbjct: 746 EGIRYLHSQGLVHRDVKLKNVLL 768



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 191 LGSPMYMAPEVIMSLKYDA 247
           +G+P++MAPE ++S  YD+
Sbjct: 793 VGTPVHMAPE-LLSGHYDS 810


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 30.3 bits (65), Expect = 0.009
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 27  IHAKGIVHRDLKPQNILLTHSILPPRTPHPSDITLKIADFGFAR 158
           +H +GIV+RDLK  N+LL             D  +KIADFG  +
Sbjct: 101 LHGRGIVYRDLKLDNVLL-----------DQDGHIKIADFGMCK 133


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 9   AEAMSAIHAKGIVHRDLKPQNILLTHSILPPRTPHPSDITLKIADFGFAR 158
           A  M  +     VHRDL  +N+L+  +++            KIADFG +R
Sbjct: 745 ASGMQYLAEMNYVHRDLAARNVLVNAALV-----------CKIADFGLSR 783


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 270 HNSLPVPYREGSLPSHHAXRXES 338
           H+S P   + G  P HH    E+
Sbjct: 450 HSSYPAAIQIGHTPHHHPHPPET 472


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 200 PMYMAPEVIMSLK 238
           P Y++P+VI +LK
Sbjct: 440 PRYLSPDVISALK 452


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 144 FGFARFLXEGNM 179
           FG+ R++ EGNM
Sbjct: 188 FGWNRYVPEGNM 199


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 54  DLKPQNILLTHSILPP 101
           D+K +N  L ++ILPP
Sbjct: 748 DMKRRNGALIYNILPP 763


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 144 FGFARFLXEGNM 179
           FG+ R++ EGNM
Sbjct: 64  FGWNRYVPEGNM 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,486
Number of Sequences: 438
Number of extensions: 2747
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)