Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30590
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    29   0.033
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.7  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 29.1 bits (62), Expect = 0.033
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +1

Query: 1    GRMGIQGSPGDQGRPGIPG-RDGCNGTDGE--PGIAGPKGSQXPRGYAGSKGDKGDKGEP 171
            G  G+QG  G QG  G+PG   G     G+   G+  P G Q  RG +G +     + + 
Sbjct: 858  GVQGVQGVQGVQGVQGVPGLLQGVQQVFGQGVQGMNVPYGMQ--RGQSGGQTWSNSQVQG 915

Query: 172  AHI---GRYPKGQKGEPGADGMQGQPGLVGPKDQLV 270
              +   G    GQ+   G   +  QP  V  +DQ+V
Sbjct: 916  VAVPGSGIVASGQQHAGGWQSIYAQPQTV--QDQIV 949


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -2

Query: 110 PFGPAIPGSPSVPLQP-----SLPGIPGLPWSPGD-P*IPIL 3
           P G  +P S   P+ P     ++ G+P LP  PG  P +P +
Sbjct: 404 PAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTM 445


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 337 LAPLSPLGPVKPAGP 293
           L P+SP G VKP  P
Sbjct: 319 LTPVSPYGYVKPISP 333


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 95   IPGSPSVPLQPSLPGIPGLPWSP 27
            IPG   + +   + G+P LP++P
Sbjct: 1138 IPGPNGIKMPSFMEGMPHLPFTP 1160



 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +3

Query: 228  ARTTRSGWTQGPVGLKGPKGRVGPAGLTGPKGDK 329
            A   R G       LK  K    P G+ GP G K
Sbjct: 1112 ATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGIK 1145


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 197 DKKENLVQMACKDNQVWLDPRTSW 268
           D+K  ++   C   Q+W D    W
Sbjct: 46  DEKNQILTTNCWVTQIWTDHHLKW 69


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 92  PGSPSVPLQPSLPGIPGLPWSPGDP*IPIL 3
           P S S+P  PS   +P    S   P IPIL
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPIL 788


>AY739659-1|AAU85298.1|  288|Apis mellifera
          hyperpolarization-activated ion channelvariant T
          protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 7  MGIQGSPGDQGRPGIPGRD 63
          + + G+P ++  PG+PG++
Sbjct: 16 VSLYGTPKEEPGPGLPGQE 34


>AY739658-1|AAU85297.1|  664|Apis mellifera
          hyperpolarization-activated ion channelvariant L
          protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 7  MGIQGSPGDQGRPGIPGRD 63
          + + G+P ++  PG+PG++
Sbjct: 16 VSLYGTPKEEPGPGLPGQE 34


>AY280848-1|AAQ16312.1|  632|Apis mellifera
          hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 7  MGIQGSPGDQGRPGIPGRD 63
          + + G+P ++  PG+PG++
Sbjct: 16 VSLYGTPKEEPGPGLPGQE 34


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 232 LACHLHQVLLFVLSDIVQCELVHLYLPYLLWI 137
           +AC L   +L++ +  V  E   + +P L W+
Sbjct: 316 VACWLPFFILYLATPFVPVEPPDILMPALTWL 347


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 100 QLFQVHHQFHYNH 62
           Q  ++  +FHYNH
Sbjct: 19  QTLELEKEFHYNH 31


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 125 VVTLDPKEIREIKVNQLTLDDIRKDKKENLVQMAC 229
           VVT    +  +I      LD IR    ENLVQ AC
Sbjct: 170 VVTAYKADYTKISTLDAILDIIRNMVPENLVQ-AC 203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 258 GPVGLKGPKGRVGPAGLTGPKGDKGARG 341
           GPV +K P  RV  +  TG   +  ARG
Sbjct: 2   GPVFVKEPPNRVDFSNGTGAVVECQARG 29


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 265 TGPWVQPDLVVLA 227
           +GPW+   L+VLA
Sbjct: 61  SGPWILVTLIVLA 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,480
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 30
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)