Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30587
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 130 6e-31
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 130 6e-31
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 114 4e-26
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 114 5e-26
02_02_0196 + 7685933-7685961,7686086-7686284 66 1e-11
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 42 4e-04
01_01_0582 - 4317216-4317731 28 4.6
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 130 bits (315), Expect = 6e-31
Identities = 61/84 (72%), Positives = 68/84 (80%)
Frame = +2
Query: 257 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 436
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136
Query: 437 GFNVAHRRRKTGKVGFPHRLTKED 508
G+ VA RRR +VG HR+TKED
Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKED 160
Score = 114 bits (275), Expect = 4e-26
Identities = 57/80 (71%), Positives = 64/80 (80%)
Frame = +3
Query: 36 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 215
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 216 RNEKIAVHCTVRGLKQKKSL 275
RNEKIA + TVRG K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 478 GISPPPHKGRSMKWFQQKYDGIILNSKAK*N 570
GI K +MKWFQ KY+G+ILN KA+ N
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEGVILN-KAQAN 180
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 130 bits (315), Expect = 6e-31
Identities = 61/84 (72%), Positives = 68/84 (80%)
Frame = +2
Query: 257 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 436
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136
Query: 437 GFNVAHRRRKTGKVGFPHRLTKED 508
G+ VA RRR +VG HR+TKED
Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKED 160
Score = 114 bits (274), Expect = 5e-26
Identities = 57/80 (71%), Positives = 64/80 (80%)
Frame = +3
Query: 36 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 215
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 216 RNEKIAVHCTVRGLKQKKSL 275
RNEKIA + TVRG K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 478 GISPPPHKGRSMKWFQQKYDGIILNSKAK*N 570
GI K +MKWFQ KY+G+ILN KA+ N
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEGVILN-KAQAN 180
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 114 bits (275), Expect = 4e-26
Identities = 57/80 (71%), Positives = 64/80 (80%)
Frame = +3
Query: 36 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 215
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 216 RNEKIAVHCTVRGLKQKKSL 275
RNEKIA + TVRG K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 67.3 bits (157), Expect = 8e-12
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +2
Query: 377 KYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKED 508
+YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKED
Sbjct: 116 RYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKED 159
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 478 GISPPPHKGRSMKWFQQKYDGIILNSKAK*N 570
GI K +MKWFQ KY+G+ILN KA+ N
Sbjct: 150 GIQHRVTKEDAMKWFQVKYEGVILN-KAQAN 179
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 114 bits (274), Expect = 5e-26
Identities = 57/80 (71%), Positives = 64/80 (80%)
Frame = +3
Query: 36 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 215
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 29 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 88
Query: 216 RNEKIAVHCTVRGLKQKKSL 275
RNEKIA + TVRG K + L
Sbjct: 89 RNEKIACYVTVRGEKAMQLL 108
Score = 68.1 bits (159), Expect = 5e-12
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = +2
Query: 257 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 379
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 103 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 66.5 bits (155), Expect = 1e-11
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = +2
Query: 380 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKED 508
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKED
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKED 53
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +1
Query: 478 GISPPPHKGRSMKWFQQKYDGIILNSKAK*N 570
GI K +MKWFQ KY+G+ILN KA+ N
Sbjct: 44 GIQHRVTKEDAMKWFQVKYEGVILN-KAQAN 73
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +3
Query: 54 NVMRNLHIRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 224
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 225 KIAVHCTVRG 254
I + T+RG
Sbjct: 158 TIGIAVTLRG 167
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -2
Query: 217 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 92
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,428
Number of Sequences: 37544
Number of extensions: 348809
Number of successful extensions: 984
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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