Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30587
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   137   6e-33
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   136   8e-33
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   3.1  
AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormo...    29   3.1  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical p...    27   9.5  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  137 bits (331), Expect = 6e-33
 Identities = 67/85 (78%), Positives = 73/85 (85%)
 Frame = +3

Query: 21  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 200
           K  E  E  ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 201 SFGIRRNEKIAVHCTVRGLKQKKSL 275
           +FGIRRNEKIAVHCTVRG K ++ L
Sbjct: 66  TFGIRRNEKIAVHCTVRGPKAEEIL 90



 Score =  136 bits (328), Expect = 1e-32
 Identities = 63/92 (68%), Positives = 75/92 (81%)
 Frame = +2

Query: 233 CPLYSPRTKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 412
           C +  P  KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+D
Sbjct: 79  CTVRGP--KAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMD 136

Query: 413 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKED 508
           FYVVL R G  +A RRR  G+VG  HR+ +E+
Sbjct: 137 FYVVLDRAGRRIAKRRRAPGRVGPSHRVEREE 168



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +1

Query: 478 GISPPPHKGRSMKWFQQKYDGIILNSKAK 564
           G S    +  S+KWFQQKYDGIIL  K K
Sbjct: 159 GPSHRVEREESIKWFQQKYDGIILPPKPK 187


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  136 bits (330), Expect = 8e-33
 Identities = 67/85 (78%), Positives = 72/85 (84%)
 Frame = +3

Query: 21  KGEEGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 200
           K  E  E   +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR
Sbjct: 6   KQTEIREKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVR 65

Query: 201 SFGIRRNEKIAVHCTVRGLKQKKSL 275
           +FGIRRNEKIAVHCTVRG K ++ L
Sbjct: 66  TFGIRRNEKIAVHCTVRGPKAEEIL 90



 Score =  134 bits (325), Expect = 3e-32
 Identities = 62/92 (67%), Positives = 74/92 (80%)
 Frame = +2

Query: 233 CPLYSPRTKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 412
           C +  P  KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+D
Sbjct: 79  CTVRGP--KAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMD 136

Query: 413 FYVVLGRPGFNVAHRRRKTGKVGFPHRLTKED 508
           FYVVL R G  V+ RRR  G++G  HR+ KE+
Sbjct: 137 FYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEE 168



 Score = 36.3 bits (80), Expect = 0.016
 Identities = 19/35 (54%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 469 RKSGISPPPH---KGRSMKWFQQKYDGIILNSKAK 564
           R  G   P H   K  ++KWFQQKYDGIIL  K K
Sbjct: 153 RAPGRIGPSHRVDKEETIKWFQQKYDGIILPPKPK 187


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 383 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 505
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 260 AEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 400
           AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 359 AEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>AF024495-1|AAB70338.3|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 125 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 230 CCPLYSPRTKAEEILERGLKVREYELRRDNFSATGNF 340
           C   +  R + ++  E G+   +++  RD+F ATG F
Sbjct: 55  CSRNFCKRCRLKKCREMGMDTTKFQYNRDSFRATGQF 91


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -1

Query: 251 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 138
           S CT+D   F   D+K+  C+ S+ K   Y +++ E+  H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245


>U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical
           protein T28A11.4 protein.
          Length = 90

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 237 GQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 103
           G+Q+FH++G +K A     WK       V P+ ++  S+  +IHQ
Sbjct: 51  GEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 230 CCPLYSPRTKAEEILERGLKVREYE 304
           CCP+ S     E+ILE   KV EYE
Sbjct: 55  CCPIISTLMILEKILEIMGKVEEYE 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,624,436
Number of Sequences: 27780
Number of extensions: 303331
Number of successful extensions: 778
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)