Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30585
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.83 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.83 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -3

Query: 521 TISLHPDWPNTKFLESLPQCMA*IFAR*PRKVRRVRICMRPIGSRFE-VAWASDVSHAAF 345
           T SLH D P  + LE+  +    +  +   +     IC       F+ VAWA  + H   
Sbjct: 198 TSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIPHFTS 257

Query: 344 LASLIAFLRVSASWRRL 294
           L      L + A W  L
Sbjct: 258 LPLEDQVLLLRAGWNEL 274


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = -3

Query: 521 TISLHPDWPNTKFLESLPQCMA*IFAR*PRKVRRVRICMRPIGSRFE-VAWASDVSHAAF 345
           T SLH D P  + LE+  +    +  +   +     IC       F+ VAWA  + H   
Sbjct: 198 TSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSHICNATNKQLFQLVAWAKHIPHFTS 257

Query: 344 LASLIAFLRVSASWRRL 294
           L      L + A W  L
Sbjct: 258 LPLEDQVLLLRAGWNEL 274


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 246 TDDRQPAPRTYNTQRTDPSVSNVPSI 169
           T+D+  + + Y T  + PS  N+PS+
Sbjct: 370 TNDQDYSSQNYLTVHSFPSTLNIPSV 395


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 214 QHATHRSFCQQCPFDRRSSDF 152
           +H      C+ CP   +SSD+
Sbjct: 271 KHEAGSHSCEACPAHSKSSDY 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,036
Number of Sequences: 438
Number of extensions: 3468
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)