Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30584
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         31   0.81 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.4  
07_01_0240 - 1749674-1750514,1751157-1752040                           29   4.3  
02_02_0101 - 6788090-6788356,6788770-6788940                           28   5.7  
06_01_0092 - 775290-775691                                             28   7.6  
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227     28   7.6  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 470 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 336
           N+N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 284 ITIHWPSFYNVV-TGKTLALPNLIALQH 364
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>07_01_0240 - 1749674-1750514,1751157-1752040
          Length = 574

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 211 WNLHWKMFLIWTFIVAVLAIQTKSVVAQSCR 119
           W LH    L WT +V + AI T ++VA   R
Sbjct: 66  WLLHTFCILQWTVLVQIAAINTITLVATDAR 96


>02_02_0101 - 6788090-6788356,6788770-6788940
          Length = 145

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -2

Query: 192 CF*FGHSSWLFWR--SRPKVLLHNHAGH 115
           CF   H+S++ WR  SRPK++ +   GH
Sbjct: 75  CFPVAHTSFMSWRDESRPKIVNNLRRGH 102


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 404 RASSLLRQLAKGGCAARR 351
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 596 NKSPLLKNVDSXVKGRKNRLSG 661
           NKSPL+  +DS ++G  N++SG
Sbjct: 111 NKSPLIDFLDSVIQGSFNKVSG 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,033,071
Number of Sequences: 37544
Number of extensions: 456882
Number of successful extensions: 1059
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)