Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30576
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    30   0.35 
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    29   0.61 
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    27   2.5  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   5.7  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   7.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   9.9  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 111 PVRRKLAQDSRREISVRGLGXCRRSLLEARDRRVH 215
           P+R  L+ D +  ++++GL  C  SL+EAR   +H
Sbjct: 237 PLREVLSSDLKSYMNIKGLAFC-DSLIEARPNTIH 270


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 384 ASAPRTNFTTLKLKPDQTKKTFTTIRSFLSAFTTKT 491
           AS+P +N +T   +P + K  F    S  SAFT K+
Sbjct: 149 ASSPFSNVSTASSEPKEEKSAFGAFASSKSAFTMKS 184


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 44  WSRTSRTETDRSA--LRTNSATNITCATETGT 133
           WS T   +  RS   +RTN+ TN TC   + T
Sbjct: 116 WSDTDGVDAGRSTSDIRTNACTNYTCFDYSST 147


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 87  VQTQQQTLPVRRKLAQDSRREISVRGLGXCRRSLLEARDRRVHIDGHAFRALHRR 251
           +Q Q++ L +R+K  +D+R+E+  +      R  L  R++   +  +    L  R
Sbjct: 37  IQRQEEQLALRKKAIEDARQEVLQQIQHRKFRQYLHEREQEARLQEYYLEQLQER 91


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +3

Query: 309 CVRNIVVGETPVKVPNSAVGRGVTWASA-------PRTNFT-TLKLKPDQTKKTFTTIRS 464
           C+  ++  +  + V +  V  G TWASA       P    T T+ LKP +T K+ T +  
Sbjct: 9   CLEQLITDDLKL-VEHQEVSNGATWASALQSTKDVPSHALTKTIVLKP-KTAKSQTVVPI 66

Query: 465 FLSAFTTKTS 494
            L+A  T ++
Sbjct: 67  ILAALETTST 76


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 554 KS*IIELLKLIVKFYTYQFRLIMFC 628
           KS I E  KL++KF   + R I+FC
Sbjct: 534 KSAISEASKLLIKFAEKRVRTIVFC 558


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 225 VRRCVRADPGLREVTVDTXRDHVQRFHDVNLVPV 124
           VRRC+  D   R   +D    HV R     L PV
Sbjct: 487 VRRCLMRDSRKRPSAIDLLSSHVIRLGTAVLPPV 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,480
Number of Sequences: 5004
Number of extensions: 42302
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)