Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30576
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   4.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = +1

Query: 118 DGNWHKIHXXXXXXXXXXXXDGHFSKPGIGAYTSTDTHSALYIG 249
           DG WH I+            +G+        Y S DT +   +G
Sbjct: 347 DGKWHNIYSEKGLNILGNIIEGNADSYNTEFYGSIDTLARKILG 390


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = +1

Query: 118 DGNWHKIHXXXXXXXXXXXXDGHFSKPGIGAYTSTDTHSALYIG 249
           DG WH I+            +G+        Y S DT +   +G
Sbjct: 347 DGKWHNIYSEKGLNILGNIIEGNADSYNTEFYGSIDTLARKILG 390


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 246 DVERGMRVRRCVRADP 199
           D+E  +++R  +R DP
Sbjct: 152 DIEEALKIREEIRVDP 167


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 246 DVERGMRVRRCVRADP 199
           D+E  +++R  +R DP
Sbjct: 152 DIEEALKIREEIRVDP 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,321
Number of Sequences: 438
Number of extensions: 3377
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)