Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30572
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0519 - 34481751-34482722 32 0.31
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 31 0.55
07_03_1136 + 24218601-24218734,24218769-24219906 29 2.9
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 29 2.9
10_08_0271 - 16382655-16384451 29 3.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.9
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 3.9
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 29 3.9
05_05_0298 - 23926266-23926442,23926573-23926632,23926822-239270... 28 6.8
03_03_0142 + 14800317-14801240 28 6.8
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 6.8
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 6.8
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 27 8.9
05_04_0002 + 17031662-17032264 27 8.9
01_07_0082 - 40965947-40967023 27 8.9
>03_06_0519 - 34481751-34482722
Length = 323
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 15 GCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRK 149
G APP ++ T + RS R GA P H A+ S+T+ S +
Sbjct: 28 GAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSR 72
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 68 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGXSTP 193
+ P+ G A P A STF H Q P ATN +++ N +TP
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATNPSTIPQN-VATP 624
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/33 (51%), Positives = 17/33 (51%)
Frame = -2
Query: 102 GGTARRPVLGGSGSESKMLVWPPPGGRSTLLDR 4
GG A R VLGG G L PP GGR L R
Sbjct: 140 GGGAPRRVLGGGGGGGA-LARPPGGGRGGALGR 171
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 61 RTGATEDRAPCRSTKRN---EHFQPRTRR*AESDQRHFSSDQRSXHS*GEPGATDPAGG 228
RTG E R T+R E +P R A + +R +++QR + + G +DPAGG
Sbjct: 575 RTGGVERRRREPVTRRRGGKERRRPSWRALAANRRRGEAANQRRGEAATQRGGSDPAGG 633
>10_08_0271 - 16382655-16384451
Length = 598
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Frame = +2
Query: 2 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVP----------PSATSTFSHGQGDEPKA 151
R +S V R GGG T+ P PP G A P PS +T H + A
Sbjct: 64 RKASPVDRGGGGGGTSFSGHSPSPPDAGGSAKPESPHDSGVKAPSELTTVEHTKQPSEPA 123
Query: 152 TNGTSVATNGXSTPKES 202
+ GT G + S
Sbjct: 124 STGTESDDGGKPSSASS 140
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 26 PPGGGHTNIFDSEPEPPRTGRRAV-PPSATSTFSHGQGDEPKATNGTSVATNGXSTP 193
PP G N F + P PP R + P+ +T S G P + TNG P
Sbjct: 653 PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVP 709
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +2
Query: 65 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 181
P PP A PP S + +G G P G +VA G
Sbjct: 167 PPPPYGSGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGG 205
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 5 LSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSH 127
L +R RPP GG T + + P+ P AT F H
Sbjct: 173 LYTRAPRPPRGGKTYLLTAAPQCPYPDASLAAALATGLFDH 213
>05_05_0298 -
23926266-23926442,23926573-23926632,23926822-23927029,
23927471-23927703,23928806-23928860,23928943-23929649
Length = 479
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 361 PHPLAVSLYNQIFDFHLTHIMSQICIEAKFFLR 459
PHP ++L++ D H H++ ++C + F R
Sbjct: 96 PHPNVINLHDVYEDVHGVHLVLELCSGGELFDR 128
>03_03_0142 + 14800317-14801240
Length = 307
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 65 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSV 169
P P R G A P+A +T G E +T GTS+
Sbjct: 198 PPPARKGLSACNPAAATTTPGGAAAESASTAGTSL 232
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +2
Query: 59 SEPEPPRTGRRAVPPSATSTFSHGQ--GDEPKATNGTSVATNGXSTPKE 199
S P PP + VPPS T+ + GQ EP+ G + G E
Sbjct: 94 SPPPPPPSSPPPVPPSPTAAPTTGQSWNSEPERKEGATATDVGHDVKTE 142
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 32 GGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKA-TNGTSVAT-NGXSTP 193
GGG+T P P +G P ++ D P + ++G+S T G STP
Sbjct: 250 GGGYTPTPSDTPPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTP 305
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 252 PSRQSSPSGPGAAQGRSPQARXGPPRRVLLGLVVNRTAPVGCES 383
PS SSP+ PG G +P PP +RT P GC +
Sbjct: 264 PSSGSSPTTPGGGGGYTPTPSDTPPSP---SSGSSRTTPGGCST 304
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 6 YQAGCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALS 122
Y+A CSA P + T +++ R+ R AV R+LS
Sbjct: 33 YEAACSADPELGTFDTALRRRASRAITAVASGVEVRSLS 71
>05_04_0002 + 17031662-17032264
Length = 200
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 80 TGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGXSTP 193
+G+R P S+TST + G GD+ + +S +++ ++P
Sbjct: 54 SGKRGPPTSSTSTMASG-GDDDEEEGASSSSSSADTSP 90
>01_07_0082 - 40965947-40967023
Length = 358
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 26 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 160
PP G+ + ++P PP+ G PP + + G G P+A G
Sbjct: 257 PPQYGYG--YPAQPPPPQAGYGYPPPPPQAGYGGGYGYPPQAGYG 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,995
Number of Sequences: 37544
Number of extensions: 310094
Number of successful extensions: 1280
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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