Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30572
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 41  HTNIFDSEPEPPRTGR-RAVPPSATSTFSHG--QGDEPKATNGTSVATNGXSTPK 196
           H       P+PP+  R R +   + S    G  + D+P +++ +S  T+  S+P+
Sbjct: 555 HRASLSKTPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPR 609


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 15   GCSAPPVVATLTSSIPNR 68
            GC++PP  AT   S+ +R
Sbjct: 1750 GCASPPPAATSMKSVSSR 1767


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 15   GCSAPPVVATLTSSIPNR 68
            GC++PP  AT   S+ +R
Sbjct: 1746 GCASPPPAATSMKSVSSR 1763


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 255 SRQSSPSGPGAAQGRSPQARXG 320
           S  SSP   GAA    P  R G
Sbjct: 524 STSSSPPAKGAAAAGQPSKRNG 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,887
Number of Sequences: 438
Number of extensions: 2827
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)