Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30570
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    33   0.002
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.8  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   2.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.6  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   8.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = +1

Query: 13  VGRNVTKLDNVARECAQVGKKPLIIKADISNDEEAKXIVQQTIDAFGKLDVLINNAGMNK 192
           +   V K+  +  E      K + ++ D+SN  +   +++      G +D+LINNA +N 
Sbjct: 37  IAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINI 96

Query: 193 SGSLLAGNLLE 225
             +L    +L+
Sbjct: 97  DVTLQNDEVLD 107


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 302 LDEVRSRKARYQNDRSR 252
           LDE++ +  R+Q+ RS+
Sbjct: 127 LDEIKKKTTRFQDSRSK 143


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 302 LDEVRSRKARYQNDRSR 252
           LDE++ +  R+Q+ RS+
Sbjct: 127 LDEIKKKTTRFQDSRSK 143


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 302 LDEVRSRKARYQNDRSR 252
           LDE++ +  R+Q+ RS+
Sbjct: 127 LDEIKKKTTRFQDSRSK 143


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 IDAFGKLDVLINNAGMNKSGSLLAGN 216
           ID +GK   +    G+N  G+++ GN
Sbjct: 346 IDEYGKKIDIYTPEGLNMLGNVIEGN 371


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 326 IQYRWNHGTNA 358
           I+Y+WN G N+
Sbjct: 166 IRYKWNEGPNS 176


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 326 IQYRWNHGTNA 358
           I+Y+WN G N+
Sbjct: 105 IRYKWNEGPNS 115


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 334 ILDTFMMFPFVSMRCGAARLVIK 266
           ++ ++ + P +S++C   R VIK
Sbjct: 16  LITSYFVTPTMSIKCNCKRHVIK 38


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 278 PCGSAPHRDEGKHHKR 325
           P GS+ H D G+++ R
Sbjct: 380 PSGSSVHSDSGENNSR 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,815
Number of Sequences: 438
Number of extensions: 3172
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)