Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30564
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   2.5  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   4.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   4.5  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   5.9  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 198  WYYWGKRRSXXXGGHWVW 251
            +YY G  +     GHWVW
Sbjct: 1071 FYYDGPNKDGLASGHWVW 1088


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 162 WWPCQTFITLITLLSFF 112
           WWPC+T +  + L   F
Sbjct: 83  WWPCKTTVVCLILFLLF 99


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 74  PGSPGRP*SPFCPGAPGNPGLP 9
           PG P  P  P  PGA   PG P
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAP 561


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -1

Query: 334 NPRSPLSPFS-----PGNPGIPEGP*SPFCPGHQTQWPPS 230
           NP  PL+P         NP IP+G  S    G +T  PPS
Sbjct: 220 NPSLPLNPSVLQGQVMNNPTIPKGTPSTSIEGAKTSIPPS 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,617,856
Number of Sequences: 5004
Number of extensions: 25949
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)