Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30564
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909     28   3.3  
12_02_1045 + 25656495-25656566,25657788-25657884,25658327-256584...    28   4.4  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    28   4.4  
06_03_0752 - 24171847-24174321                                         28   4.4  
06_01_0145 + 1092764-1093351                                           28   4.4  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    28   4.4  
08_01_0452 - 3999072-3999344                                           27   7.7  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    27   7.7  

>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
          Length = 627

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 334 NPRSPLSPFSPGNPGI---PEGP*SPFCPGHQTQWPP 233
           +PR P++P+ PG+  +   P GP     P HQ  +PP
Sbjct: 159 SPRPPVAPYPPGSMHMMPPPLGPMMRGPPMHQPGYPP 195


>12_02_1045 +
           25656495-25656566,25657788-25657884,25658327-25658419,
           25658524-25658644,25659115-25659181,25659261-25659302,
           25659455-25659583,25659674-25659733,25659887-25659929,
           25660198-25660280,25660496-25661002,25661088-25661588
          Length = 604

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 220 DRXEXGATGFGAQGKKVIKVP-QVYQDYLVRKVIKEIVD*MDYLVEPDR 363
           D  E    G G   +K  KV  +VY +Y+ + +I+EI    + L+EP R
Sbjct: 379 DAKEARVVGEGHLQRKTEKVDGRVYHEYVFKSLIREIEGDDEKLIEPLR 427


>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -1

Query: 337  SNPRSPLSPFSPGNPGIPEGP*SPFCPGHQTQWPPSXXDL 218
            +N  S LSP  P  PG P  P  P  PG     PP    L
Sbjct: 912  ANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPPPPGSL 951


>06_03_0752 - 24171847-24174321
          Length = 824

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 154 LPNLHYPDHPFVLFHLGAQVYQADPIVPEVLVDLD---RLFVLEHQVILASHVF 2
           LP +HY  HPF +  L A  YQA  IV   L   +   R  V+E+ + + SH++
Sbjct: 561 LPRMHYL-HPFTVTQLDALRYQAMGIVAARLGRAEPPLRREVVEYMLDVESHMW 613


>06_01_0145 + 1092764-1093351
          Length = 195

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 372 PGQXGDRGYPGRPGLQGEQGMKG 440
           PG+ G  G PG+PG +G  G  G
Sbjct: 15  PGEPGQPGEPGQPGGRGRGGRGG 37



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 366 GPPGQXGDRGYPGRPGLQGEQGMKG 440
           G PGQ G+ G PG  G  G  G  G
Sbjct: 16  GEPGQPGEPGQPGGRGRGGRGGRGG 40


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 331 PRSPLSPFSPGNP-GIPEGP*SPFCPG 254
           PR P+ P +PG P G+P+ P +P  PG
Sbjct: 84  PRLPILP-TPGMPLGVPQVPGAPLMPG 109


>08_01_0452 - 3999072-3999344
          Length = 90

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 234 GGHWVWCPGQKG 269
           GG+W+WCP   G
Sbjct: 43  GGNWIWCPPTSG 54


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 74   PGSPGRP*SPFCPGAPGNPGLP 9
            P  PG P  P  PG PG P  P
Sbjct: 1199 PTPPGAPAPPMPPGVPGGPPPP 1220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,556
Number of Sequences: 37544
Number of extensions: 196700
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)