Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30564
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    25   0.31 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   6.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.9  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 366 GPPGQXGDRGYPGRPGLQGEQGMKGNKXQAAELVYG 473
           G  G  G +G  G  G+QG QG+ G   Q  + V+G
Sbjct: 852 GVQGVQGVQGVQGVQGVQGVQGVPG-LLQGVQQVFG 886



 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 366 GPPGQXGDRGYPGRPGLQGEQGMKG 440
           G  G    +G  G  G+QG QG++G
Sbjct: 843 GVQGVQTAQGVQGVQGVQGVQGVQG 867



 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 378 QXGDRGYPGRPGLQGEQGMKG 440
           Q G +G     G+QG QG++G
Sbjct: 841 QQGVQGVQTAQGVQGVQGVQG 861


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 68  FRDNWVGLVYLGSQVKKD 121
           + DNW  ++YLG+ V  D
Sbjct: 312 YMDNWKMMMYLGTPVMPD 329


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +3

Query: 165 SCRSNWTTWNSW 200
           S   +W  WN W
Sbjct: 691 SVNKSWNKWNDW 702


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +3

Query: 165 SCRSNWTTWNSW 200
           S   +W  WN W
Sbjct: 691 SVNKSWNKWNDW 702


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +3

Query: 165 SCRSNWTTWNSW 200
           S   +W  WN W
Sbjct: 691 SVNKSWNKWNDW 702


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 321 LYHLSHQVILVYLRDLDHLFALGTKPSG 238
           +YH   +  LV+  + DHL  +  +  G
Sbjct: 209 IYHNDDKTFLVWCNEEDHLRIISMQMGG 236


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 366 GPPGQXGDRG 395
           GPPG  GD G
Sbjct: 333 GPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 366 GPPGQXGDRG 395
           GPPG  GD G
Sbjct: 333 GPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 366 GPPGQXGDRG 395
           GPPG  GD G
Sbjct: 272 GPPGVPGDHG 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,956
Number of Sequences: 438
Number of extensions: 2093
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)