Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30562
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    80   3e-16
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...    27   3.4  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   4.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   6.0  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.9  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 41/82 (50%), Positives = 53/82 (64%)
 Frame = +3

Query: 255 KDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 434
           K YMK + A+L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M YR
Sbjct: 89  KGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYR 148

Query: 435 DFDGTQIPIMMFFKHGLEEEKF 500
           + DG   P M+FFK GL  EKF
Sbjct: 149 E-DGI-TPYMIFFKDGLVSEKF 168



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/24 (54%), Positives = 20/24 (83%)
 Frame = +2

Query: 2  DIITGDEMFSDTYKMKLVDEVIYE 73
          D+I+GDE+ SD Y +K VD+++YE
Sbjct: 6  DVISGDELVSDAYDLKEVDDIVYE 29


>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 88  VTRAQGDIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGD 231
           +T   G  Q + F PS  E +E TD+ ++  V  ++    V    F D
Sbjct: 6   LTEVWGKPQKDIFFPSGSEVEESTDAPIQRTVQPIVTGSSVLALKFAD 53


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = +3

Query: 252 PKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEY 431
           P D  K  V  +     +++ V   N+ K + D+L + +   + T ++     +V + E+
Sbjct: 567 PNDAKKNQVTAVRRDTFEKIPVPLNNLEKGVSDLLAKIQTNMYETAKAERDAHVVKVKEW 626

Query: 432 RDF 440
            DF
Sbjct: 627 ADF 629


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 456 VFAYHQSLYIPSWQPC-HHN 400
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 201 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDIT 103
           V++D +NS LDG +  +    S R +T  LD++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLS 373


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 380 ELKFLKPAEDVFHYFVHVCFKYFNLVR 300
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 HIVPKDYMKKLVAKLEEKAPDQVEVFKT 326
           H+V KD++K   A L   A D ++ + T
Sbjct: 229 HLVKKDFLKYYTAYLASSAVDYIDAYFT 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,289
Number of Sequences: 5004
Number of extensions: 54085
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)