Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30560
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 29 0.83
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 29 0.83
03_01_0182 - 1466097-1466147,1466197-1466331,1466659-1466777,146... 29 1.5
01_06_0325 - 28488446-28489369 28 1.9
11_01_0457 - 3532604-3532971,3533072-3534019,3534304-3534331 27 4.4
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245... 27 4.4
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 27 4.4
02_05_0426 - 28881671-28881753,28882130-28882621,28882802-288828... 27 4.4
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 27 5.9
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 26 7.7
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 26 7.7
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 26 7.7
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 29.5 bits (63), Expect = 0.83
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 76 KTIFNQTLQEAGFSGWSENEPNNANNIEFCGTLFKNDGKLNDVDCSDKYAFI 231
+ I +EA +N+P+N N + G+L K L DVD ++A +
Sbjct: 551 RNILRDIKEEAESVSAKKNQPDNMNGLADNGSLTKQSKNLRDVDHGLRHAIL 602
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 29.5 bits (63), Expect = 0.83
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 215 INTPSYAKRKCICNRSVLKTYLYSSYYE 298
I PS +K C+C S +K YL S+ Y+
Sbjct: 841 IEMPSKSKLSCVCWNSYIKNYLASTDYD 868
>03_01_0182 -
1466097-1466147,1466197-1466331,1466659-1466777,
1467005-1467064,1467206-1467296,1467767-1467955,
1469310-1469393,1469540-1469701,1469790-1469933,
1470053-1470247
Length = 409
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 5 PRPHISFMPV-SEHRNPLKTKLPCSRRFSIKHYKKPVSVAGPKT 133
P P +P+ + H PL +LP R +++H S A P+T
Sbjct: 17 PAPVSHLLPLRAHHARPLPARLPPPPRVAVQHTAARASDASPRT 60
>01_06_0325 - 28488446-28489369
Length = 307
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 145 ANNIEFCGTLFKNDGKLNDVDCSDKYAFICEKEVHM*PFCAKN 273
+ N F G L DGK++ DC+ +F + PFC N
Sbjct: 265 SQNRTFLGCLCA-DGKVSSTDCTSSKSFDADPSFFSPPFCKAN 306
>11_01_0457 - 3532604-3532971,3533072-3534019,3534304-3534331
Length = 447
Score = 27.1 bits (57), Expect = 4.4
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -2
Query: 200 SFSLPSFLKSVPQNS--MLFALLGSFSDQPL 114
S SLPSF + +PQ S M+F G FS L
Sbjct: 110 SLSLPSFARHLPQVSYNMIFRATGGFSTSNL 140
>10_08_0104 +
14824122-14824178,14824274-14824318,14824419-14824536,
14825522-14825581,14825783-14825891,14825972-14826197,
14826274-14826390,14826510-14826611
Length = 277
Score = 27.1 bits (57), Expect = 4.4
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 36 QSTGTH*KRNSRVQDDFQSNIT-RSRFQWLVRKRT*QREQHR 158
++TGT KR DFQS T RSRF + Q E HR
Sbjct: 234 ENTGTIVKRREDYPSDFQSQATDRSRFSGMNISVHEQNEFHR 275
>03_04_0054 +
16883678-16883719,16884667-16884723,16884852-16884959,
16885028-16885102,16885744-16885833,16885950-16886057,
16886137-16886211,16886371-16886433,16886531-16886924,
16888539-16888651,16888799-16888829,16888987-16889864
Length = 677
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 40 AQEPTKNETPVFKTIFNQTLQEAGFSGWSENEPNNAN 150
A++ K + P+ QTL +AG G +E+ +NAN
Sbjct: 626 AEKDDKRKDPIQNANPEQTLTDAGDDGKTEDAEHNAN 662
>02_05_0426 -
28881671-28881753,28882130-28882621,28882802-28882864,
28883251-28883440,28883534-28883642,28883952-28884363,
28884967-28885196,28885294-28885403
Length = 562
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 1 EAQTTYFFYAGFRAQEPTKNETPVFKTIFNQTLQEAGFSGWSENEPNNANNIEFCGT 171
+ Q FF + A + K E + F++ + G WS+ NAN F GT
Sbjct: 459 QRQPLSFFGNDYAAVDSVKQENQTLRPFFDEWPK--GRDSWSDLADENANLSSFSGT 513
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 43 QEPTKNETPVFKTIFNQTLQEAGFSGWSENEPNNANNIEFCGT 171
+ P K E K+I + L+E G + S ++ ++++ CG+
Sbjct: 284 ERPAKQEAHKRKSISDLELEEFGMASSSRQRLSDISDVQLCGS 326
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 26.2 bits (55), Expect = 7.7
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 14 HISFMPVSEHRNPLKTKLPCSRRF-SIKHYKKPVSVAGPKTNLTTRTTSNFAARSSKTTA 190
+ISF P S NP + PCS F + KH K V+ G + + T ++A R + + +
Sbjct: 190 NISFDPGSLIGNPAWRESPCSYAFVAEKHCKSFVNRTGDR---SVPTVLDWAIRGNGSCS 246
Query: 191 N*MTSTAPINTPSY 232
+ + A ++ SY
Sbjct: 247 SATGAPACVSAHSY 260
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 26.2 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 145 ANNIEFCGTLFKNDGKLNDVDCSD 216
+N + C F++DG N+V CSD
Sbjct: 776 SNELGNCSCAFEDDGASNEVLCSD 799
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 26.2 bits (55), Expect = 7.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 59 TKLPCSRRFSIKHYKKPVSVA 121
++LP + R S+ H+K+P +VA
Sbjct: 20 SRLPSNLRLSLSHHKQPAAVA 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,367
Number of Sequences: 37544
Number of extensions: 143091
Number of successful extensions: 405
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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