Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30560
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   3.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   3.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 215 SEQSTSFSLPSFLKSVPQNSMLFAL 141
           +EQSTS  LPS  +  P NS  FA+
Sbjct: 347 TEQSTSMDLPSD-QVEPDNSSNFAM 370


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 215 SEQSTSFSLPSFLKSVPQNSMLFAL 141
           +EQSTS  LPS  +  P NS  FA+
Sbjct: 347 TEQSTSMDLPSD-QVEPDNSSNFAM 370


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +1

Query: 82  IFNQTLQEAGFSGWSENEPNNANNIE 159
           +F   + +     W+EN P    NIE
Sbjct: 314 LFFGLVSDTALGCWNENRPLKRRNIE 339



 Score = 21.0 bits (42), Expect = 4.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 81  DFQSNITRSRFQW 119
           DF++NI + ++QW
Sbjct: 26  DFKANIFQVKYQW 38


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
 Frame = +1

Query: 49  PTKNETPVFKTIFNQT--LQEAGFSG----WSEN--EPNNAN-NIEFCG--TLFKNDGKL 195
           PT N+T V + ++NQT  L   G +     W  N   P++ +  I F G   + K   K+
Sbjct: 377 PTFNQTNVDQYLYNQTGPLSSTGLAQVTGIWHSNLTTPDDPDIQIFFAGYQAICKPKLKI 436

Query: 196 NDVDCSDKYA 225
            D+   DK A
Sbjct: 437 ADLSAHDKQA 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,019
Number of Sequences: 438
Number of extensions: 1595
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)