Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30559
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.040
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    27   3.4  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.5  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   6.0  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 17/70 (24%), Positives = 29/70 (41%)
 Frame = -1

Query: 219 AWPLLPFIPCSPCKXXXXXXXXXXXXXXXXXXXXXXXXPSNPRSPLSPFSPGNPGIPEGP 40
           A P+ P +P +P +                         S P+ P++P +P  P +P+ P
Sbjct: 534 AAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPP 593

Query: 39  *SPFCPGAPN 10
            +P  P AP+
Sbjct: 594 VAPVVPEAPS 603



 Score = 30.7 bits (66), Expect = 0.21
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 102 SNPRSPLSPFSPGNPGIPEGP*SPFCPGAPN 10
           S P+ P++P +P  P +P+ P  P  P AP+
Sbjct: 603 SVPQPPVAPVAPEVPSVPQRPAVPVVPEAPS 633



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 102 SNPRSPLSPFSPGNPGIPEGP*SPFCPGAPN 10
           S P+ P +P  P  P +P+ P  P  P AP+
Sbjct: 633 SVPQPPAAPVVPEVPSVPQRPAVPVVPEAPS 663


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 301 RRLRLVDHHFL--ANHAVWFSFCAVHEF 224
           +R+R +   FL  ANH +W  F  VHEF
Sbjct: 93  KRMRFLLACFLIVANHILWVRFFQVHEF 120


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 271 LANHAVWFSFCAVHEFCRLAFITFHPLFTL*AWSSWIATI 152
           L     W+   A   F  +  IT +PL+ L +W+ ++  I
Sbjct: 86  LVQSVYWYFIRAPARFILMVGITLYPLYVLLSWAVFLGII 125


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 448 SGLPGAPGAPCVSQDFLTGIYWYDTVKEKSSHNVNPVTSNYGMDI 582
           +G P A     +S D    IY Y   +E+   N+     N+G+DI
Sbjct: 215 TGHPLAVKLKSISPDGQADIYCYSCDEERIDPNIKTHMLNFGIDI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,295
Number of Sequences: 5004
Number of extensions: 51576
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)