Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30559
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1160 - 24430240-24431268 31 1.2
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 1.5
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 30 1.5
09_02_0168 - 5253588-5254688 30 2.0
06_01_0145 + 1092764-1093351 30 2.0
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 30 2.0
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 2.7
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 29 2.7
05_07_0130 + 27892416-27892737,27893526-27893604,27893689-278938... 29 4.7
02_02_0100 - 6783821-6784339,6784815-6784984,6785062-6785164,678... 29 4.7
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 6.2
01_01_1051 + 8290395-8290760,8291611-8291820,8292874-8292978,829... 28 6.2
12_02_0391 - 18533427-18533620,18534120-18534405,18534967-185350... 28 8.3
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110... 28 8.3
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 8.3
>07_03_1160 - 24430240-24431268
Length = 342
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 99 NPRSPLSPFSPGNPGIPEGP*SPFCPGAPNP 7
NP P P P P IP GP P P PNP
Sbjct: 219 NPNGPSIPNQPPQP-IPNGPIKPDQPPQPNP 248
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -1
Query: 99 NPRSPLSPFSPGNPGIPEGP*SPFCPGAPNP 7
NP P P P P P GP P P PNP
Sbjct: 275 NPNGPPKPDQPPQPN-PNGPSKPDQPPRPNP 304
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 99 NPRSPLSPFSPGNPGIPEGP*SPFCPGAPNP 7
NP P P P P P+GP P P PNP
Sbjct: 247 NPDMPPKPDQPPQP-CPDGPPKPDQPPQPNP 276
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 102 SNPRSPLSPFSPGNPGIPEGP*SPFCPGAPNP 7
+N S LSP P PG P P P PG P P
Sbjct: 912 ANTASALSPPPPRPPGAPPPPPPPGKPGGPPP 943
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 96 PRSPLSPFSPGNP-GIPEGP*SPFCPGAPNPV 4
PR P+ P +PG P G+P+ P +P PG P+
Sbjct: 84 PRLPILP-TPGMPLGVPQVPGAPLMPGVRPPI 114
>09_02_0168 - 5253588-5254688
Length = 366
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +2
Query: 158 GYPGRPGLQGEQGMKGNKGQAAELVYGAKGEPDRVV 265
G PGR Q + + KG AA LV G G P R V
Sbjct: 134 GAPGRVSFQADSDAQLTKGLAALLVLGLSGAPARDV 169
>06_01_0145 + 1092764-1093351
Length = 195
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 137 PGQKGDRGYPGRPGLQGEQGMKGNKGQ 217
PG+ G G PG+PG +G G G G+
Sbjct: 15 PGEPGQPGEPGQPGGRGRGGRGGRGGR 41
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 131 GPPGQKGDRGYPGRPGLQGEQGMKGNKGQA 220
G PGQ G+ G PG G +G +G +G +G A
Sbjct: 16 GEPGQPGEPGQPGGRG-RGGRGGRGGRGGA 44
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 352 GFTGARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVS 486
G TG +G+ + G+ G +G + G +G+P PCV+
Sbjct: 469 GKTGDQGWSNRHCVAGLTGDQGRSDRLHAAGLTGIPERSDRPCVA 513
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 90 SPLSPFSPGNPGIPEGP*SPFCPGAPNP 7
+P S P P +P P SP PG P P
Sbjct: 59 APTSGSGPAAPSMPANPASPATPGPPRP 86
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 352 GFTGARGFPGPRGLPGIQGMEGERGEI 432
G G G PG R +PG+ G++ + E+
Sbjct: 498 GMPGTPGMPGSRKMPGMPGLDNDNWEV 524
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 370 GFPGPRGLPGIQGM-EGERGEIGMTGQSGLPGAPG 471
GFP R PG GM G G GM G +PG PG
Sbjct: 484 GFPMNR--PGTGGMMPGMPGTPGMPGSRKMPGMPG 516
>05_07_0130 +
27892416-27892737,27893526-27893604,27893689-27893806,
27894306-27894365
Length = 192
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 370 GFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVSQDFLTG 504
GFP P PG G G G Q P AP P +Q + TG
Sbjct: 63 GFPQPAPPPGFAGASGGGGHYHHHHQQ-QPYAPAEPYYAQGYQTG 106
>02_02_0100 -
6783821-6784339,6784815-6784984,6785062-6785164,
6785291-6785454,6786781-6786821,6786933-6787129
Length = 397
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 370 GFPGPRGLPGIQGMEGERGEIG-MTGQSGLPGAPGAPCVSQDFLTGIYWYDTVKEKSSH 543
G PG RG G G G+ G G +G G APG + F+ G+ W T + S H
Sbjct: 31 GRPGRRGGGGRDG--GDGGAYGDASGDDGR--APGGDSSGKIFVGGVAWETTEESFSKH 85
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 102 SNPRSPLSPFSPGNPGIPEGP*SPFCPGAPNP 7
+N S L P P PG P P P PG P P
Sbjct: 607 ANTASALPPPPPRPPGAPPPPPPPGKPGGPPP 638
>01_01_1051 +
8290395-8290760,8291611-8291820,8292874-8292978,
8293040-8293048,8294426-8294539,8294632-8294796
Length = 322
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +1
Query: 349 RGFTGARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPG 462
+GF G G G+P G IG TGQ PG
Sbjct: 189 KGFAGGMKRHGFSGMPASHGASLSHRSIGSTGQRDAPG 226
>12_02_0391 -
18533427-18533620,18534120-18534405,18534967-18535028,
18535526-18535613
Length = 209
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 460 GAPGAPCVSQDFLTGIYWY-DTVKEKSSHNVNPVTSNYGMDILYCT 594
G+P APC + I W ++ S +NP +S+ DIL CT
Sbjct: 85 GSPQAPCYPRC----IEWILQNQQDNGSWGINPSSSSVDKDILLCT 126
>10_01_0089 +
1103841-1104152,1104809-1104946,1105527-1105631,
1106403-1106577,1107124-1107398,1108222-1108391,
1108508-1109084
Length = 583
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 182 QGEQGMKGNKGQAAELVYGAKGEPDRVVCQEMMV 283
+G+ +KGN Q A+ +YG + P+ ++ ++M+
Sbjct: 173 EGQNIIKGNIWQKAKFLYGTEFSPEEILNLKLMI 206
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 349 RGFTGARGFPGPRGLPGIQGMEGERGEIGMTGQSGLPGAPGAPCVSQDFLTGIYWY 516
RG G + P G+P Q G+ G G +GL G PG+ V + LT + Y
Sbjct: 100 RGAGGGLHY-APAGVPEQQDPTGDGGGQGWQAGAGLHGTPGSAAVFE--LTAKFCY 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,497,805
Number of Sequences: 37544
Number of extensions: 353030
Number of successful extensions: 1013
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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