Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30558
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 27 2.6
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.6
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 27 3.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 4.6
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.6
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 8.1
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 25 8.1
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 8.1
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.1
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 469 CKFCIRPTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVITVSEKYYF 329
C F IRPT R + KRL + N++ + + D +T+ E+ F
Sbjct: 145 CLFFIRPTGHSLRPIDIAVLKRLTEVVNVVPVIAKSDSLTLEERAAF 191
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 276 TFCPPPGSSCHHLTTLHPCPIPR 208
T C +C HL LHP IPR
Sbjct: 117 TRCKRLHQACQHLAKLHPSEIPR 139
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 529 YLPEIYEIINSNPIKDKDDDQLYYTKIYLDKDLRESLKIT 648
+L EIY+ I N I ++ + +Y+ L++S+KIT
Sbjct: 719 FLSEIYKAIKENEIIVAEEHDTELSFLYIWSKLQQSVKIT 758
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 272 KVILLKNRLEKLMKADNKEKIILFTDSYDVMFLGNLDEIVKKF--KSF-PDTRVL 427
+++LL+ R+E KA ++ F SY LDE K++ K+F PD R L
Sbjct: 617 QLLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDE-AKRYMSKNFQPDKRAL 670
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 514 QSQIWTYNFNVWILSCKFCIRPTKLFSRKK 425
QSQI + NFNV + + ++ I+ L SR K
Sbjct: 960 QSQIRSSNFNVLLTTFEYIIKDRPLLSRIK 989
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = +1
Query: 604 KIYLDKDLRESLKITLDHKSE 666
++YLDKD+ E+ ++T+++ SE
Sbjct: 214 QLYLDKDIDENEEVTINYGSE 234
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 93 LFNSHTQATDEVVVLTVATDDNHG 164
+FN ++ T V + TD+NHG
Sbjct: 1 MFNDQSKTTSSVKGICATTDNNHG 24
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 499 SIFDSGGFIGYLPEIYEIINSNPIKDKDDDQLY 597
+ ++G F+GY P + I +N IK KD + Y
Sbjct: 146 AFLETGPFVGYYPSVVSKIRAN-IKLKDVGENY 177
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 273 FCPPPGSSCHHLTTLHPCPIPRHQYCTLWQNVKTS 169
F P + H ++ L CPI HQ +W KTS
Sbjct: 221 FYVPRFTRGHGISKLGLCPICSHQGEFIWLRTKTS 255
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 610 YLDKDLRESLKITLDHKSEIFQNLNGALSDV 702
Y+D ++ E+ T D+ Q+LNG +S++
Sbjct: 9 YVDSNMNETQNDTTDNFDAEMQDLNGYISEI 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,996
Number of Sequences: 5004
Number of extensions: 63113
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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