Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30558
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0224 - 42121011-42122486                                         29   3.6  
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343...    28   8.4  
03_02_0077 - 5463347-5463445,5463557-5463622,5463736-5463801,546...    28   8.4  

>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +2

Query: 323 KEKIILFTDSYDVMFLGNLDEIVKKFKSFPDTRVLFSAEQFCWPDAKLATQYPNIEVVSP 502
           + +++L   SY+  + G   EI+     +    +L      C+P A + T++  I  V P
Sbjct: 215 RRRVVLGVLSYNPWWAGTYGEIISGLSDYHVVDLLHDKRTHCFPGAIVGTRFHGILSVDP 274


>03_05_0331 -
           23233883-23233972,23234099-23234164,23234300-23234365,
           23234451-23234675,23234794-23235279
          Length = 310

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -1

Query: 451 PTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVITVSEKYYFLFVVSFHQL 302
           P  L++RK+   I +RL+ L NL+    + D+ T+ E+   +  V F QL
Sbjct: 231 PQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEE--AMHYVKFLQL 278


>03_02_0077 -
           5463347-5463445,5463557-5463622,5463736-5463801,
           5463886-5464182,5464268-5464714
          Length = 324

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 451 PTKLFSRKKHTCIRKRLEFLYNLI*IPQEHDVITVSEK 338
           P  L++RK+   I +RL+ L NLI    + D+ T+ E+
Sbjct: 242 PQSLYARKRRERINERLKILQNLIPNGTKVDISTMLEE 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,575,864
Number of Sequences: 37544
Number of extensions: 381099
Number of successful extensions: 926
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)