Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30557
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    27   1.6  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   3.6  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   8.3  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   8.3  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.3  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 571 MDLTIYFDRLIKFIQHKTSNWSED 500
           +D  + F+RL+  IQ+KTSN+  D
Sbjct: 243 VDTGMGFERLVSVIQNKTSNYDTD 266


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 176 QN*TFLFTKILLSLHLCAEYDI 241
           +N  FLFT ILL  +LC + D+
Sbjct: 777 RNQPFLFTNILLRFYLCLKDDV 798


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -3

Query: 303 KVIIKSLLQNRLKCTFIPMSIISY 232
           +V +K L ++ ++CT++ +S +SY
Sbjct: 308 RVCLKLLTEHGIECTYVMISALSY 331


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 565 LTIYFDRLIKFIQHKTSNWSED 500
           LTI  D ++KF++H +S + ++
Sbjct: 605 LTIIADEVVKFVEHYSSTFDQE 626


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 467 N*IWKCFISMSNMKKKFF 414
           N  WKC++ + ++KK +F
Sbjct: 160 NETWKCYLHIQDVKKSYF 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,873
Number of Sequences: 5004
Number of extensions: 37276
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)