Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30557
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ...    29   1.9  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AC006679-2|AAK84465.2|  425|Caenorhabditis elegans Ligand-gated ion
           channel protein 12 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 300 VIIKSLLQNRLKCTFIPMSIISYSAHK*RL--RSILVN 193
           V+  S+ +N +KC F P+SI SY   K R+  RS+  N
Sbjct: 184 VLEASVNENNVKCNFPPLSIQSYITEKLRMGYRSVQCN 221


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 3   ELDELEMEERCDDFNENAE 59
           E+++LE E RC   NENAE
Sbjct: 193 EIEKLETEMRCQKMNENAE 211


>AC024815-1|ABB88220.1|  344|Caenorhabditis elegans Hypothetical
           protein Y54F10BL.1 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 200 KILLSLHLCAEYDIILIGIKVHFNLFCSNDL 292
           KILL    C E+D+I   + +     CSND+
Sbjct: 109 KILLKHASCIEFDVIAYKVPIFNICICSNDI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,259,284
Number of Sequences: 27780
Number of extensions: 202776
Number of successful extensions: 389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)