Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30556
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   100   2e-22
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   100   2e-22
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    31   0.12 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   4.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.2  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   6.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.2  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 99.5 bits (237), Expect = 2e-22
 Identities = 43/55 (78%), Positives = 48/55 (87%)
 Frame = +1

Query: 88  VGRRCGGLRVLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIXWIVXAVHKHRE 252
           VGR C  LRVL+SYWV QD++YK+FEVILVDPSHKAIRRDP+I WIV  VHKHRE
Sbjct: 106 VGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRE 160



 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = +3

Query: 255 RGLTSAGRSSRGLGKGHRYSHTKGXSRRAAWLXRNTLQLRRKR 383
           RGLTS G+ SRG+GKGHR++++    + A WL  NTL LRR R
Sbjct: 162 RGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 99.5 bits (237), Expect = 2e-22
 Identities = 43/55 (78%), Positives = 48/55 (87%)
 Frame = +1

Query: 88  VGRRCGGLRVLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIXWIVXAVHKHRE 252
           VGR C  LRVL+SYWV QD++YK+FEVILVDPSHKAIRRDP+I WIV  VHKHRE
Sbjct: 106 VGRYCSNLRVLNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRE 160



 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = +3

Query: 255 RGLTSAGRSSRGLGKGHRYSHTKGXSRRAAWLXRNTLQLRRKR 383
           RGLTS G+ SRG+GKGHRY+++    + A WL  NTL LRR R
Sbjct: 162 RGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 30.7 bits (66), Expect = 0.12
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 134 LHKILHTSISRLSSWTRHTRPFVAILRSXGSXMLYISI-VRSWSDFGWSQLPRS 292
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+ VR     G+   P++
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISVKVRKAWIAGYGSQPQN 100


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 139  QDSSYKYFEVILVDPSHKAIRRDPKIXWIVXAVHK 243
            +  S KY E     P H  +   PK  WI+  +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 96  SLRWSPCVELLLGCTRFF 149
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 103 GGLRVLSSYWVAQDSSYKYFEVILVDPSHK 192
           GG R++  YW  +  +  + E  L DP  K
Sbjct: 197 GGRRIVDDYWEGEFRARGFVEGELADPDDK 226


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  TCWPSLRWSPCVELLLGCT 140
           +C PS R  P +ELLL C+
Sbjct: 595 SCGPSYRLLPKIELLLPCS 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,937
Number of Sequences: 5004
Number of extensions: 21153
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)