Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30556
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    91   6e-19
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    91   6e-19
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     31   0.38 
10_08_0857 + 21104688-21104833,21105046-21105274                       27   8.2  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 37/55 (67%), Positives = 46/55 (83%)
 Frame = +1

Query: 91  GRRCGGLRVLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIXWIVXAVHKHREI 255
           GR+ GGLRVL+SYWV +DS+YKYFE+ILVD +H AIR DP+I W+   VHKHRE+
Sbjct: 212 GRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHREL 266



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 255 RGLTSAGRSSRGL-GKGHRYSHTKGXSRRAAWLXRNTLQLRRKR 383
           RGLTSAG+  RGL GKGH + H    SRRA W    T+ LRR R
Sbjct: 267 RGLTSAGKKYRGLRGKGHTH-HKARPSRRATWKRNQTVSLRRYR 309


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 37/55 (67%), Positives = 46/55 (83%)
 Frame = +1

Query: 91  GRRCGGLRVLSSYWVAQDSSYKYFEVILVDPSHKAIRRDPKIXWIVXAVHKHREI 255
           GR+ GGLRVL+SYWV +DS+YKYFE+ILVD +H AIR DP+I W+   VHKHRE+
Sbjct: 107 GRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHREL 161



 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 255 RGLTSAGRSSRGL-GKGHRYSHTKGXSRRAAWLXRNTLQLRRKR 383
           RGLTSAG+  RGL GKGH + H    SRRA W    T+ LRR R
Sbjct: 162 RGLTSAGKKYRGLRGKGHTH-HKARPSRRATWKRNQTVSLRRYR 204


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 160 FEVILVDPSHKAIRRDPK 213
           FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316


>10_08_0857 + 21104688-21104833,21105046-21105274
          Length = 124

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 267 SAGRSSRGLGKGHRYSHTKGXSRRAAWL 350
           ++GRS  G G G R    +G SR  AW+
Sbjct: 9   ASGRSIGGAGPGRRPHLRRGESREFAWI 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,478,389
Number of Sequences: 37544
Number of extensions: 155995
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)