Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30553
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.8  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   6.8  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    25   9.0  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 493 YGSHGRYCVWQQRRRRS 443
           Y  HG  CVWQ R +++
Sbjct: 247 YSHHGPMCVWQPRSQKN 263


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 331 TRLSTGLRNPRLCQHRFQSRIHNERVASTKRALAVLV 221
           T++ST + N    QH+  +     +   T+R LAV++
Sbjct: 406 TKISTLISNTNATQHKLSTLYRGMQNKCTRRLLAVII 442


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 423 PTKLFP-R*REFCAPWGCPTAWFTVATLPLAGLDCP 319
           PTK++  +  E CAP+    AW+   T  LA    P
Sbjct: 187 PTKMYVLKHSEICAPFRTAAAWYLWKTSKLADYTKP 222


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 116 SLRRVSRKFLVIATHYFLLLNRSRVVVAVYF 208
           SL   SRKFL +   +F +L  + + +A YF
Sbjct: 806 SLNNSSRKFLELYQCFFYVLQTNEMYLANYF 836


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,678
Number of Sequences: 5004
Number of extensions: 47301
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)