Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30553
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0411 - 18730224-18730574                                         33   0.25 
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549...    28   5.3  
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793...    27   9.2  
10_08_0188 - 15596062-15597084,15597513-15597791                       27   9.2  

>12_02_0411 - 18730224-18730574
          Length = 116

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 351 ATLPLAGLDCPPGCGTPGCANT 286
           AT+PL    CPP CGTP   +T
Sbjct: 8   ATVPLLASACPPACGTPALGST 29


>01_06_0795 -
           32051794-32053362,32053452-32053595,32054102-32054965,
           32055335-32055892
          Length = 1044

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 355 CEPRCRTPPRCAEFSSSREQLSWA 426
           C PR   PPRC  + +S   L W+
Sbjct: 351 CSPRKHEPPRCLNYLTSPHVLIWS 374


>11_06_0470 +
           23977394-23977503,23977755-23977922,23978724-23979367,
           23979584-23979823,23980175-23980296,23980397-23981080
          Length = 655

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 295 TTGGSAARWTI*SRQRQRSHCEPRCRTPPRCAEFSSSREQLSWAQSD 435
           TT G+  +       R+  H   RC   PR     +SR   SW+ SD
Sbjct: 608 TTPGAVKQTRFYRVCRKPGHDSRRCPDNPRTVNNQASRSVASWSDSD 654


>10_08_0188 - 15596062-15597084,15597513-15597791
          Length = 433

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 295 TTGGSAARWTI*SRQRQRSHCEPRCRTPPRCAEFSSSREQ 414
           +  G A  WT      +R HC+ R R P    ++ S +++
Sbjct: 188 SAAGGAQVWTCKKNDGKRWHCQRRVRQPNSLCDYHSDQKR 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,634,036
Number of Sequences: 37544
Number of extensions: 374230
Number of successful extensions: 878
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)