Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30553
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    25   1.8  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016661-3|AAB66053.1|  138|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC024765-1|AAF60529.2|  300|Caenorhabditis elegans Prion-like-(q...    28   6.3  

>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 25.0 bits (52), Expect(2) = 1.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 375 CPTAWFTVATLPLAGLDCPPG 313
           CPT  FT +  P  G  C PG
Sbjct: 539 CPTKAFTCSLSPSPGKTCGPG 559



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 327 DCPPGCGTPGCANTG 283
           +C   CG  GCAN G
Sbjct: 593 ECENYCGVGGCANGG 607


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
           protein F57C7.4 protein.
          Length = 1484

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 130 IKEVPGYSNALFFVAKSFAGSRCRLFHGLLSPKQLVLALW 249
           IK VP  S+         AG++  ++ GL+S K  V+ LW
Sbjct: 677 IKNVPSKSDVFVSFTIPPAGTQLAMWPGLMSGKTFVIRLW 716


>U53180-1|AAK68285.1|  492|Caenorhabditis elegans Hypothetical
           protein D1014.7 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 141 NFLDTRRRLQLSHLHFKV 88
           N+LDT + LQ+ +LHFKV
Sbjct: 316 NYLDTIKNLQIVNLHFKV 333


>AF016661-3|AAB66053.1|  138|Caenorhabditis elegans Hypothetical
           protein F02E11.4 protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 190 SRCRLFHGLLSPKQLVLALW 249
           SRC++F   L+P  L+L+LW
Sbjct: 119 SRCKIFEDKLNPGVLILSLW 138


>AC024765-1|AAF60529.2|  300|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 82
           protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 478 RYCVWQQRRRRSVVGQIVPN*VVPEMKR 395
           +Y V QQ R+R V+ QI+P   VP+++R
Sbjct: 75  QYPVQQQNRQRQVIRQIIP--TVPQVQR 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,417,093
Number of Sequences: 27780
Number of extensions: 293187
Number of successful extensions: 704
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)