Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30553
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 465 HTQYLPWLPYLQTWLD 512
           HT   PWLP L+  LD
Sbjct: 540 HTWIHPWLPLLRNRLD 555


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 164 NNALL*PGTSLIPA 123
           N ALL PG ++IPA
Sbjct: 301 NKALLTPGVTMIPA 314


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 203 RRQRLPANDLAT 168
           +RQ +PANDL T
Sbjct: 401 KRQSVPANDLLT 412


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 628  ALKLNGELVVLLGTRCYSRSHRILCDMGQVAMVNSCSEPSSHVCRYGSH 482
            +L L+GE V+L  +  Y  S R LC        N    P + + R   H
Sbjct: 1574 SLALDGERVMLKASEDYRYSVRGLCGNFDHDSTNDFVGPKNCLFRKPEH 1622


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 179 DLATKNNALL*PGTS 135
           D+ATK NA+L  G S
Sbjct: 363 DIATKENAMLLSGRS 377


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 593 WNSLLQQEPQN 561
           WNSLL   P+N
Sbjct: 341 WNSLLPYSPEN 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,169
Number of Sequences: 438
Number of extensions: 3441
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)